Protein–RNA interactions for Protein: Q86VN1

VPS36, Vacuolar protein-sorting-associated protein 36, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36Q86VN1 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
VPS36Q86VN1 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
VPS36Q86VN1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS36Q86VN1 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS36Q86VN1 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC24.16■■□□□ 1.46
VPS36Q86VN1 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC24.16■■□□□ 1.46
VPS36Q86VN1 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.16■■□□□ 1.46
VPS36Q86VN1 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
VPS36Q86VN1 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
VPS36Q86VN1 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS36Q86VN1 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC24.16■■□□□ 1.46
VPS36Q86VN1 AC233723.2-201ENST00000623798 2106 ntBASIC24.16■■□□□ 1.46
VPS36Q86VN1 AL117328.2-201ENST00000624617 1940 ntBASIC24.16■■□□□ 1.46
VPS36Q86VN1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS36Q86VN1 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS36Q86VN1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS36Q86VN1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS36Q86VN1 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
VPS36Q86VN1 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC24.15■■□□□ 1.46
VPS36Q86VN1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS36Q86VN1 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS36Q86VN1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS36Q86VN1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
VPS36Q86VN1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS36Q86VN1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
VPS36Q86VN1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
VPS36Q86VN1 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.14■■□□□ 1.45
VPS36Q86VN1 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.45
VPS36Q86VN1 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
VPS36Q86VN1 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
VPS36Q86VN1 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
VPS36Q86VN1 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.13■■□□□ 1.45
VPS36Q86VN1 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
VPS36Q86VN1 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.13■■□□□ 1.45
VPS36Q86VN1 MIR4508-201ENST00000584178 70 ntBASIC24.13■■□□□ 1.45
VPS36Q86VN1 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC24.13■■□□□ 1.45
VPS36Q86VN1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
VPS36Q86VN1 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
VPS36Q86VN1 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
VPS36Q86VN1 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
VPS36Q86VN1 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.12■■□□□ 1.45
VPS36Q86VN1 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
VPS36Q86VN1 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC24.12■■□□□ 1.45
VPS36Q86VN1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
VPS36Q86VN1 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
VPS36Q86VN1 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
VPS36Q86VN1 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
VPS36Q86VN1 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.11■■□□□ 1.45
VPS36Q86VN1 C1orf229-201ENST00000623686 2258 ntBASIC24.11■■□□□ 1.45
VPS36Q86VN1 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
VPS36Q86VN1 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
VPS36Q86VN1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
VPS36Q86VN1 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC24.11■■□□□ 1.45
VPS36Q86VN1 PKD1P6-201ENST00000343738 4769 ntBASIC24.11■■□□□ 1.45
VPS36Q86VN1 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
VPS36Q86VN1 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
VPS36Q86VN1 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC24.1■■□□□ 1.45
VPS36Q86VN1 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC24.1■■□□□ 1.45
VPS36Q86VN1 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC24.1■■□□□ 1.45
VPS36Q86VN1 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.1■■□□□ 1.45
VPS36Q86VN1 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
VPS36Q86VN1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
VPS36Q86VN1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
VPS36Q86VN1 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC24.1■■□□□ 1.45
VPS36Q86VN1 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC24.09■■□□□ 1.45
VPS36Q86VN1 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
VPS36Q86VN1 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC24.09■■□□□ 1.45
VPS36Q86VN1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC24.09■■□□□ 1.45
VPS36Q86VN1 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
VPS36Q86VN1 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
VPS36Q86VN1 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
VPS36Q86VN1 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.09■■□□□ 1.45
VPS36Q86VN1 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
VPS36Q86VN1 KRT8P33-201ENST00000508125 1423 ntBASIC24.09■■□□□ 1.45
VPS36Q86VN1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC24.08■■□□□ 1.45
VPS36Q86VN1 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
VPS36Q86VN1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
VPS36Q86VN1 AC079630.1-202ENST00000618127 1840 ntBASIC24.08■■□□□ 1.45
VPS36Q86VN1 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
VPS36Q86VN1 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
VPS36Q86VN1 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC24.08■■□□□ 1.45
VPS36Q86VN1 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC24.08■■□□□ 1.45
VPS36Q86VN1 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
VPS36Q86VN1 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.44
VPS36Q86VN1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
VPS36Q86VN1 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
VPS36Q86VN1 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
VPS36Q86VN1 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
VPS36Q86VN1 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms