Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC28.81■■■□□ 2.2
RC3H1Q5TC82 AL121749.1-202ENST00000609313 2153 ntBASIC28.81■■■□□ 2.2
RC3H1Q5TC82 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
RC3H1Q5TC82 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC28.8■■■□□ 2.2
RC3H1Q5TC82 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
RC3H1Q5TC82 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
RC3H1Q5TC82 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC28.8■■■□□ 2.2
RC3H1Q5TC82 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
RC3H1Q5TC82 GXYLT1P2-201ENST00000433312 1230 ntBASIC28.8■■■□□ 2.2
RC3H1Q5TC82 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC28.8■■■□□ 2.2
RC3H1Q5TC82 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
RC3H1Q5TC82 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
RC3H1Q5TC82 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC28.79■■■□□ 2.2
RC3H1Q5TC82 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC28.79■■■□□ 2.2
RC3H1Q5TC82 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC28.79■■■□□ 2.2
RC3H1Q5TC82 EI24-204ENST00000527235 1625 ntTSL 5 BASIC28.79■■■□□ 2.2
RC3H1Q5TC82 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
RC3H1Q5TC82 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC28.78■■■□□ 2.2
RC3H1Q5TC82 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
RC3H1Q5TC82 LINC02228-203ENST00000641970 1355 ntBASIC28.78■■■□□ 2.2
RC3H1Q5TC82 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
RC3H1Q5TC82 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
RC3H1Q5TC82 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC28.78■■■□□ 2.2
RC3H1Q5TC82 ME3-201ENST00000323418 1068 ntTSL 5 BASIC28.78■■■□□ 2.2
RC3H1Q5TC82 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC28.78■■■□□ 2.2
RC3H1Q5TC82 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
RC3H1Q5TC82 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC28.78■■■□□ 2.2
RC3H1Q5TC82 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
RC3H1Q5TC82 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
RC3H1Q5TC82 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
RC3H1Q5TC82 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC28.77■■■□□ 2.2
RC3H1Q5TC82 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC28.77■■■□□ 2.2
RC3H1Q5TC82 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC28.77■■■□□ 2.2
RC3H1Q5TC82 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC28.77■■■□□ 2.2
RC3H1Q5TC82 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC28.77■■■□□ 2.2
RC3H1Q5TC82 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
RC3H1Q5TC82 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
RC3H1Q5TC82 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC28.76■■■□□ 2.19
RC3H1Q5TC82 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
RC3H1Q5TC82 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC28.76■■■□□ 2.19
RC3H1Q5TC82 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
RC3H1Q5TC82 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC28.76■■■□□ 2.19
RC3H1Q5TC82 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
RC3H1Q5TC82 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
RC3H1Q5TC82 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
RC3H1Q5TC82 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
RC3H1Q5TC82 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC28.75■■■□□ 2.19
RC3H1Q5TC82 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
RC3H1Q5TC82 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC28.75■■■□□ 2.19
RC3H1Q5TC82 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
RC3H1Q5TC82 OR2I1P-207ENST00000453522 948 ntBASIC28.75■■■□□ 2.19
RC3H1Q5TC82 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
RC3H1Q5TC82 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC28.75■■■□□ 2.19
RC3H1Q5TC82 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
RC3H1Q5TC82 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
RC3H1Q5TC82 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
RC3H1Q5TC82 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC28.74■■■□□ 2.19
RC3H1Q5TC82 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
RC3H1Q5TC82 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
RC3H1Q5TC82 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
RC3H1Q5TC82 AC010525.1-201ENST00000585559 441 ntBASIC28.74■■■□□ 2.19
RC3H1Q5TC82 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC28.74■■■□□ 2.19
RC3H1Q5TC82 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC28.74■■■□□ 2.19
RC3H1Q5TC82 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
RC3H1Q5TC82 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC28.74■■■□□ 2.19
RC3H1Q5TC82 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
RC3H1Q5TC82 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
RC3H1Q5TC82 LHPP-203ENST00000392757 840 ntTSL 3 BASIC28.73■■■□□ 2.19
RC3H1Q5TC82 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
RC3H1Q5TC82 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC28.73■■■□□ 2.19
RC3H1Q5TC82 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
RC3H1Q5TC82 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
RC3H1Q5TC82 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
RC3H1Q5TC82 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
RC3H1Q5TC82 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC28.72■■■□□ 2.19
RC3H1Q5TC82 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
RC3H1Q5TC82 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC28.72■■■□□ 2.19
RC3H1Q5TC82 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
RC3H1Q5TC82 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC28.72■■■□□ 2.19
RC3H1Q5TC82 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC28.72■■■□□ 2.19
RC3H1Q5TC82 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
RC3H1Q5TC82 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC28.71■■■□□ 2.19
RC3H1Q5TC82 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
RC3H1Q5TC82 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC28.71■■■□□ 2.19
RC3H1Q5TC82 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC28.71■■■□□ 2.19
RC3H1Q5TC82 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC28.71■■■□□ 2.19
RC3H1Q5TC82 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
RC3H1Q5TC82 DENND3-207ENST00000518347 850 ntTSL 2 BASIC28.71■■■□□ 2.19
RC3H1Q5TC82 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
RC3H1Q5TC82 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC28.71■■■□□ 2.19
RC3H1Q5TC82 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
RC3H1Q5TC82 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC28.7■■■□□ 2.19
RC3H1Q5TC82 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
RC3H1Q5TC82 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
RC3H1Q5TC82 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
RC3H1Q5TC82 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
RC3H1Q5TC82 AP005435.1-201ENST00000529293 1178 ntBASIC28.7■■■□□ 2.18
RC3H1Q5TC82 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
RC3H1Q5TC82 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
RC3H1Q5TC82 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms