Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL8A1P27658 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL8A1P27658 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.74■□□□□ 0.75
COL8A1P27658 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL8A1P27658 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.74■□□□□ 0.75
COL8A1P27658 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL8A1P27658 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.73■□□□□ 0.75
COL8A1P27658 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL8A1P27658 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.73■□□□□ 0.75
COL8A1P27658 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.73■□□□□ 0.75
COL8A1P27658 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.73■□□□□ 0.75
COL8A1P27658 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL8A1P27658 AC097639.1-201ENST00000565519 1891 ntBASIC19.73■□□□□ 0.75
COL8A1P27658 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
COL8A1P27658 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC19.72■□□□□ 0.75
COL8A1P27658 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL8A1P27658 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.72■□□□□ 0.75
COL8A1P27658 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.72■□□□□ 0.75
COL8A1P27658 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL8A1P27658 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL8A1P27658 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.72■□□□□ 0.75
COL8A1P27658 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
COL8A1P27658 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL8A1P27658 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL8A1P27658 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.71■□□□□ 0.75
COL8A1P27658 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL8A1P27658 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL8A1P27658 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL8A1P27658 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.71■□□□□ 0.75
COL8A1P27658 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL8A1P27658 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.71■□□□□ 0.75
COL8A1P27658 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.71■□□□□ 0.75
COL8A1P27658 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL8A1P27658 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.71■□□□□ 0.75
COL8A1P27658 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL8A1P27658 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.71■□□□□ 0.75
COL8A1P27658 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.71■□□□□ 0.75
COL8A1P27658 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.71■□□□□ 0.75
COL8A1P27658 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL8A1P27658 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC19.71■□□□□ 0.75
COL8A1P27658 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL8A1P27658 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL8A1P27658 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL8A1P27658 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL8A1P27658 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.7■□□□□ 0.74
COL8A1P27658 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
COL8A1P27658 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.7■□□□□ 0.74
COL8A1P27658 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC19.7■□□□□ 0.74
COL8A1P27658 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
COL8A1P27658 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL8A1P27658 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL8A1P27658 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
COL8A1P27658 NCF1B-203ENST00000435988 1254 ntBASIC19.7■□□□□ 0.74
COL8A1P27658 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL8A1P27658 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.7■□□□□ 0.74
COL8A1P27658 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.7■□□□□ 0.74
COL8A1P27658 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.7■□□□□ 0.74
COL8A1P27658 AL499627.2-201ENST00000606283 725 ntBASIC19.7■□□□□ 0.74
COL8A1P27658 BID-214ENST00000617586 542 ntTSL 5 BASIC19.7■□□□□ 0.74
COL8A1P27658 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL8A1P27658 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL8A1P27658 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
COL8A1P27658 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL8A1P27658 AL121749.1-202ENST00000609313 2153 ntBASIC19.69■□□□□ 0.74
COL8A1P27658 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL8A1P27658 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
COL8A1P27658 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL8A1P27658 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
COL8A1P27658 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.69■□□□□ 0.74
COL8A1P27658 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL8A1P27658 CREM-210ENST00000374721 2020 ntTSL 5 BASIC19.69■□□□□ 0.74
COL8A1P27658 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL8A1P27658 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
COL8A1P27658 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.69■□□□□ 0.74
COL8A1P27658 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL8A1P27658 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL8A1P27658 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.68■□□□□ 0.74
COL8A1P27658 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.68■□□□□ 0.74
COL8A1P27658 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL8A1P27658 AC093827.2-201ENST00000512654 315 ntBASIC19.68■□□□□ 0.74
COL8A1P27658 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.68■□□□□ 0.74
COL8A1P27658 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL8A1P27658 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL8A1P27658 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
COL8A1P27658 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL8A1P27658 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL8A1P27658 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL8A1P27658 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.68■□□□□ 0.74
COL8A1P27658 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.68■□□□□ 0.74
COL8A1P27658 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL8A1P27658 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.67■□□□□ 0.74
COL8A1P27658 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL8A1P27658 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.67■□□□□ 0.74
COL8A1P27658 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.67■□□□□ 0.74
COL8A1P27658 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL8A1P27658 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL8A1P27658 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL8A1P27658 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL8A1P27658 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL8A1P27658 AC096887.2-201ENST00000623443 1957 ntBASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms