Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.99■■□□□ 1.11
SIX3O95343 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SIX3O95343 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SIX3O95343 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SIX3O95343 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SIX3O95343 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SIX3O95343 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.99■■□□□ 1.11
SIX3O95343 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SIX3O95343 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
SIX3O95343 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.99■■□□□ 1.11
SIX3O95343 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.98■■□□□ 1.11
SIX3O95343 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SIX3O95343 SNX5-217ENST00000606557 1087 ntBASIC21.98■■□□□ 1.11
SIX3O95343 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SIX3O95343 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
SIX3O95343 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
SIX3O95343 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.98■■□□□ 1.11
SIX3O95343 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
SIX3O95343 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SIX3O95343 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SIX3O95343 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
SIX3O95343 AL117328.2-201ENST00000624617 1940 ntBASIC21.98■■□□□ 1.11
SIX3O95343 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SIX3O95343 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SIX3O95343 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.97■■□□□ 1.11
SIX3O95343 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.97■■□□□ 1.11
SIX3O95343 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SIX3O95343 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SIX3O95343 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.97■■□□□ 1.11
SIX3O95343 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.97■■□□□ 1.11
SIX3O95343 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.97■■□□□ 1.11
SIX3O95343 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
SIX3O95343 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SIX3O95343 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SIX3O95343 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SIX3O95343 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
SIX3O95343 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
SIX3O95343 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SIX3O95343 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.96■■□□□ 1.11
SIX3O95343 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
SIX3O95343 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SIX3O95343 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.96■■□□□ 1.11
SIX3O95343 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.96■■□□□ 1.11
SIX3O95343 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.96■■□□□ 1.11
SIX3O95343 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SIX3O95343 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.96■■□□□ 1.11
SIX3O95343 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SIX3O95343 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SIX3O95343 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
SIX3O95343 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SIX3O95343 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.95■■□□□ 1.1
SIX3O95343 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.95■■□□□ 1.1
SIX3O95343 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.95■■□□□ 1.1
SIX3O95343 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.95■■□□□ 1.1
SIX3O95343 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.95■■□□□ 1.1
SIX3O95343 AL031848.2-201ENST00000607670 837 ntBASIC21.95■■□□□ 1.1
SIX3O95343 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.95■■□□□ 1.1
SIX3O95343 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
SIX3O95343 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SIX3O95343 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SIX3O95343 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SIX3O95343 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.94■■□□□ 1.1
SIX3O95343 AC137630.3-201ENST00000607245 391 ntBASIC21.94■■□□□ 1.1
SIX3O95343 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SIX3O95343 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.94■■□□□ 1.1
SIX3O95343 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.94■■□□□ 1.1
SIX3O95343 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SIX3O95343 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.94■■□□□ 1.1
SIX3O95343 EP400NL-214ENST00000641289 2402 ntBASIC21.94■■□□□ 1.1
SIX3O95343 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SIX3O95343 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
SIX3O95343 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SIX3O95343 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SIX3O95343 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
SIX3O95343 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.93■■□□□ 1.1
SIX3O95343 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX3O95343 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX3O95343 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.92■■□□□ 1.1
SIX3O95343 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX3O95343 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
SIX3O95343 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX3O95343 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SIX3O95343 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.92■■□□□ 1.1
SIX3O95343 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SIX3O95343 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.92■■□□□ 1.1
SIX3O95343 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SIX3O95343 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SIX3O95343 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SIX3O95343 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.91■■□□□ 1.1
SIX3O95343 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.91■■□□□ 1.1
SIX3O95343 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SIX3O95343 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SIX3O95343 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.91■■□□□ 1.1
SIX3O95343 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
SIX3O95343 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SIX3O95343 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX3O95343 AL353803.4-201ENST00000565882 1934 ntBASIC21.9■■□□□ 1.1
SIX3O95343 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX3O95343 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX3O95343 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms