Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC39.24■■■■□ 3.87
CUX2O14529 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC39.23■■■■□ 3.87
CUX2O14529 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC39.23■■■■□ 3.87
CUX2O14529 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC39.23■■■■□ 3.87
CUX2O14529 TBCB-214ENST00000629269 413 ntTSL 5 BASIC39.23■■■■□ 3.87
CUX2O14529 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC39.22■■■■□ 3.87
CUX2O14529 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC39.22■■■■□ 3.87
CUX2O14529 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC39.22■■■■□ 3.87
CUX2O14529 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC39.22■■■■□ 3.87
CUX2O14529 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC39.22■■■■□ 3.87
CUX2O14529 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC39.21■■■■□ 3.87
CUX2O14529 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
CUX2O14529 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC39.21■■■■□ 3.87
CUX2O14529 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC39.21■■■■□ 3.87
CUX2O14529 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC39.21■■■■□ 3.87
CUX2O14529 RGMA-211ENST00000557420 989 ntTSL 3 BASIC39.21■■■■□ 3.87
CUX2O14529 AL138781.1-201ENST00000566567 1274 ntBASIC39.21■■■■□ 3.87
CUX2O14529 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC39.21■■■■□ 3.87
CUX2O14529 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC39.21■■■■□ 3.87
CUX2O14529 SHD-204ENST00000599689 1729 ntTSL 5 BASIC39.2■■■■□ 3.87
CUX2O14529 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC39.2■■■■□ 3.87
CUX2O14529 TFG-210ENST00000620299 1289 ntTSL 5 BASIC39.2■■■■□ 3.87
CUX2O14529 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC39.2■■■■□ 3.87
CUX2O14529 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC39.19■■■■□ 3.86
CUX2O14529 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC39.19■■■■□ 3.86
CUX2O14529 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC39.19■■■■□ 3.86
CUX2O14529 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC39.19■■■■□ 3.86
CUX2O14529 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC39.19■■■■□ 3.86
CUX2O14529 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC39.19■■■■□ 3.86
CUX2O14529 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC39.19■■■■□ 3.86
CUX2O14529 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC39.19■■■■□ 3.86
CUX2O14529 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC39.19■■■■□ 3.86
CUX2O14529 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC39.18■■■■□ 3.86
CUX2O14529 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC39.18■■■■□ 3.86
CUX2O14529 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC39.18■■■■□ 3.86
CUX2O14529 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC39.18■■■■□ 3.86
CUX2O14529 MDK-213ENST00000617138 635 ntTSL 2 BASIC39.18■■■■□ 3.86
CUX2O14529 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC39.18■■■■□ 3.86
CUX2O14529 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC39.18■■■■□ 3.86
CUX2O14529 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC39.18■■■■□ 3.86
CUX2O14529 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC39.17■■■■□ 3.86
CUX2O14529 SMUG1P1-201ENST00000590640 811 ntBASIC39.17■■■■□ 3.86
CUX2O14529 pRNA.6-201ENST00000610482 90 ntBASIC39.17■■■■□ 3.86
CUX2O14529 pRNA.5-201ENST00000612139 90 ntBASIC39.17■■■■□ 3.86
CUX2O14529 AC011767.1-201ENST00000617410 1153 ntBASIC39.17■■■■□ 3.86
CUX2O14529 pRNA.11-201ENST00000618423 90 ntBASIC39.17■■■■□ 3.86
CUX2O14529 pRNA.13-201ENST00000619112 90 ntBASIC39.17■■■■□ 3.86
CUX2O14529 VGF-203ENST00000611537 1622 ntTSL 5 BASIC39.17■■■■□ 3.86
CUX2O14529 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC39.17■■■■□ 3.86
CUX2O14529 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC39.17■■■■□ 3.86
CUX2O14529 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC39.17■■■■□ 3.86
CUX2O14529 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC39.16■■■■□ 3.86
CUX2O14529 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC39.15■■■■□ 3.86
CUX2O14529 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC39.15■■■■□ 3.86
CUX2O14529 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC39.15■■■■□ 3.86
CUX2O14529 LHPP-203ENST00000392757 840 ntTSL 3 BASIC39.15■■■■□ 3.86
CUX2O14529 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC39.15■■■■□ 3.86
CUX2O14529 AC098590.1-201ENST00000468126 897 ntBASIC39.15■■■■□ 3.86
CUX2O14529 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC39.15■■■■□ 3.86
CUX2O14529 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC39.15■■■■□ 3.86
CUX2O14529 AC142086.6-201ENST00000621154 1765 ntBASIC39.15■■■■□ 3.86
CUX2O14529 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC39.15■■■■□ 3.86
CUX2O14529 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC39.14■■■■□ 3.86
CUX2O14529 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC39.14■■■■□ 3.86
CUX2O14529 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC39.14■■■■□ 3.86
CUX2O14529 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC39.14■■■■□ 3.86
CUX2O14529 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC39.13■■■■□ 3.86
CUX2O14529 AC004854.2-201ENST00000608450 1441 ntBASIC39.13■■■■□ 3.86
CUX2O14529 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC39.13■■■■□ 3.85
CUX2O14529 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC39.13■■■■□ 3.85
CUX2O14529 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC39.13■■■■□ 3.85
CUX2O14529 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC39.13■■■■□ 3.85
CUX2O14529 GTSE1-AS1-202ENST00000623117 1518 ntBASIC39.13■■■■□ 3.85
CUX2O14529 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC39.12■■■■□ 3.85
CUX2O14529 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC39.12■■■■□ 3.85
CUX2O14529 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC39.12■■■■□ 3.85
CUX2O14529 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC39.12■■■■□ 3.85
CUX2O14529 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC39.12■■■■□ 3.85
CUX2O14529 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC39.12■■■■□ 3.85
CUX2O14529 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC39.12■■■■□ 3.85
CUX2O14529 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC39.11■■■■□ 3.85
CUX2O14529 KRT18P29-201ENST00000397031 1267 ntBASIC39.11■■■■□ 3.85
CUX2O14529 AL596275.1-201ENST00000423464 877 ntBASIC39.11■■■■□ 3.85
CUX2O14529 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC39.11■■■■□ 3.85
CUX2O14529 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC39.11■■■■□ 3.85
CUX2O14529 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC39.1■■■■□ 3.85
CUX2O14529 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC39.1■■■■□ 3.85
CUX2O14529 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC39.1■■■■□ 3.85
CUX2O14529 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC39.1■■■■□ 3.85
CUX2O14529 KRT18P11-201ENST00000435214 1283 ntBASIC39.1■■■■□ 3.85
CUX2O14529 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC39.1■■■■□ 3.85
CUX2O14529 METTL15-202ENST00000403099 795 ntTSL 5 BASIC39.09■■■■□ 3.85
CUX2O14529 AC083906.2-201ENST00000511578 360 ntBASIC39.09■■■■□ 3.85
CUX2O14529 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC39.09■■■■□ 3.85
CUX2O14529 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC39.09■■■■□ 3.85
CUX2O14529 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC39.08■■■■□ 3.85
CUX2O14529 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC39.08■■■■□ 3.85
CUX2O14529 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC39.08■■■■□ 3.85
CUX2O14529 COX20-201ENST00000366528 568 ntTSL 2 BASIC39.07■■■■□ 3.85
CUX2O14529 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC39.07■■■■□ 3.85
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms