Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC16.41■□□□□ 0.22
SMKR1H3BMG3 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMKR1H3BMG3 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC16.41■□□□□ 0.22
SMKR1H3BMG3 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SMKR1H3BMG3 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SMKR1H3BMG3 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC16.41■□□□□ 0.22
SMKR1H3BMG3 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC16.41■□□□□ 0.22
SMKR1H3BMG3 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SMKR1H3BMG3 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMKR1H3BMG3 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SMKR1H3BMG3 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SMKR1H3BMG3 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC16.4■□□□□ 0.22
SMKR1H3BMG3 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SMKR1H3BMG3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SMKR1H3BMG3 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SMKR1H3BMG3 SLC25A24-204ENST00000569674 2357 ntBASIC16.4■□□□□ 0.22
SMKR1H3BMG3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC16.39■□□□□ 0.22
SMKR1H3BMG3 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
SMKR1H3BMG3 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.22
SMKR1H3BMG3 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SMKR1H3BMG3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC16.39■□□□□ 0.21
SMKR1H3BMG3 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC16.39■□□□□ 0.21
SMKR1H3BMG3 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SMKR1H3BMG3 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SMKR1H3BMG3 AGPS-202ENST00000409888 815 ntTSL 4 BASIC16.39■□□□□ 0.21
SMKR1H3BMG3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC16.39■□□□□ 0.21
SMKR1H3BMG3 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMKR1H3BMG3 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMKR1H3BMG3 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SMKR1H3BMG3 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SMKR1H3BMG3 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 AC060814.1-201ENST00000554326 538 ntBASIC16.38■□□□□ 0.21
SMKR1H3BMG3 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMKR1H3BMG3 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMKR1H3BMG3 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 RP9P-202ENST00000450133 1212 ntBASIC16.36■□□□□ 0.21
SMKR1H3BMG3 AC093536.1-201ENST00000569153 554 ntBASIC16.36■□□□□ 0.21
SMKR1H3BMG3 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMKR1H3BMG3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 GCA-201ENST00000233612 1694 ntTSL 2 BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 ZNRF2P2-203ENST00000454624 420 ntBASIC16.35■□□□□ 0.21
SMKR1H3BMG3 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 AL161729.1-201ENST00000604104 1402 ntBASIC16.35■□□□□ 0.21
SMKR1H3BMG3 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMKR1H3BMG3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms