Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC39.66■■■■□ 3.94
CCDC88BA6NC98 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC39.66■■■■□ 3.94
CCDC88BA6NC98 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC39.66■■■■□ 3.94
CCDC88BA6NC98 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC39.66■■■■□ 3.94
CCDC88BA6NC98 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC39.66■■■■□ 3.94
CCDC88BA6NC98 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC39.65■■■■□ 3.94
CCDC88BA6NC98 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC39.65■■■■□ 3.94
CCDC88BA6NC98 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC39.65■■■■□ 3.94
CCDC88BA6NC98 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC39.65■■■■□ 3.94
CCDC88BA6NC98 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC39.65■■■■□ 3.94
CCDC88BA6NC98 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC39.65■■■■□ 3.94
CCDC88BA6NC98 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC39.65■■■■□ 3.94
CCDC88BA6NC98 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC39.64■■■■□ 3.94
CCDC88BA6NC98 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC39.64■■■■□ 3.94
CCDC88BA6NC98 AC010525.1-201ENST00000585559 441 ntBASIC39.64■■■■□ 3.94
CCDC88BA6NC98 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC39.63■■■■□ 3.94
CCDC88BA6NC98 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC39.63■■■■□ 3.94
CCDC88BA6NC98 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC39.63■■■■□ 3.94
CCDC88BA6NC98 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC39.63■■■■□ 3.94
CCDC88BA6NC98 CCDC92B-201ENST00000575506 885 ntBASIC39.63■■■■□ 3.94
CCDC88BA6NC98 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC39.63■■■■□ 3.93
CCDC88BA6NC98 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.93
CCDC88BA6NC98 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC39.63■■■■□ 3.93
CCDC88BA6NC98 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC39.63■■■■□ 3.93
CCDC88BA6NC98 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.93
CCDC88BA6NC98 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC39.62■■■■□ 3.93
CCDC88BA6NC98 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC39.62■■■■□ 3.93
CCDC88BA6NC98 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC39.62■■■■□ 3.93
CCDC88BA6NC98 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC39.62■■■■□ 3.93
CCDC88BA6NC98 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC39.62■■■■□ 3.93
CCDC88BA6NC98 AL499627.2-201ENST00000606283 725 ntBASIC39.62■■■■□ 3.93
CCDC88BA6NC98 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC39.62■■■■□ 3.93
CCDC88BA6NC98 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
CCDC88BA6NC98 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC39.61■■■■□ 3.93
CCDC88BA6NC98 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC39.61■■■■□ 3.93
CCDC88BA6NC98 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC39.61■■■■□ 3.93
CCDC88BA6NC98 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC39.61■■■■□ 3.93
CCDC88BA6NC98 AC133637.1-201ENST00000624115 1537 ntBASIC39.6■■■■□ 3.93
CCDC88BA6NC98 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
CCDC88BA6NC98 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC39.6■■■■□ 3.93
CCDC88BA6NC98 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC39.6■■■■□ 3.93
CCDC88BA6NC98 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
CCDC88BA6NC98 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC39.6■■■■□ 3.93
CCDC88BA6NC98 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC39.6■■■■□ 3.93
CCDC88BA6NC98 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC39.59■■■■□ 3.93
CCDC88BA6NC98 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC39.59■■■■□ 3.93
CCDC88BA6NC98 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC39.59■■■■□ 3.93
CCDC88BA6NC98 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC39.59■■■■□ 3.93
CCDC88BA6NC98 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC39.59■■■■□ 3.93
CCDC88BA6NC98 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC39.58■■■■□ 3.93
CCDC88BA6NC98 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC39.58■■■■□ 3.93
CCDC88BA6NC98 TERF1P2-201ENST00000583350 1212 ntBASIC39.58■■■■□ 3.93
CCDC88BA6NC98 AL354811.1-201ENST00000610286 706 ntBASIC39.57■■■■□ 3.93
CCDC88BA6NC98 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC39.57■■■■□ 3.93
CCDC88BA6NC98 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC39.57■■■■□ 3.93
CCDC88BA6NC98 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC39.57■■■■□ 3.93
CCDC88BA6NC98 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC39.57■■■■□ 3.92
CCDC88BA6NC98 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC39.56■■■■□ 3.92
CCDC88BA6NC98 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC39.56■■■■□ 3.92
CCDC88BA6NC98 ME3-201ENST00000323418 1068 ntTSL 5 BASIC39.56■■■■□ 3.92
CCDC88BA6NC98 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC39.56■■■■□ 3.92
CCDC88BA6NC98 OR2I1P-207ENST00000453522 948 ntBASIC39.56■■■■□ 3.92
CCDC88BA6NC98 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC39.56■■■■□ 3.92
CCDC88BA6NC98 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC39.56■■■■□ 3.92
CCDC88BA6NC98 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC39.56■■■■□ 3.92
CCDC88BA6NC98 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC39.56■■■■□ 3.92
CCDC88BA6NC98 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC39.56■■■■□ 3.92
CCDC88BA6NC98 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC39.55■■■■□ 3.92
CCDC88BA6NC98 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC39.55■■■■□ 3.92
CCDC88BA6NC98 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC39.55■■■■□ 3.92
CCDC88BA6NC98 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC39.55■■■■□ 3.92
CCDC88BA6NC98 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC39.55■■■■□ 3.92
CCDC88BA6NC98 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC39.54■■■■□ 3.92
CCDC88BA6NC98 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC39.54■■■■□ 3.92
CCDC88BA6NC98 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC39.54■■■■□ 3.92
CCDC88BA6NC98 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
CCDC88BA6NC98 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC39.54■■■■□ 3.92
CCDC88BA6NC98 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC39.54■■■■□ 3.92
CCDC88BA6NC98 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC39.54■■■■□ 3.92
CCDC88BA6NC98 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC39.54■■■■□ 3.92
CCDC88BA6NC98 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC39.54■■■■□ 3.92
CCDC88BA6NC98 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC39.54■■■■□ 3.92
CCDC88BA6NC98 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
CCDC88BA6NC98 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC39.53■■■■□ 3.92
CCDC88BA6NC98 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
CCDC88BA6NC98 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC39.53■■■■□ 3.92
CCDC88BA6NC98 DLX3-202ENST00000512495 834 ntTSL 2 BASIC39.52■■■■□ 3.92
CCDC88BA6NC98 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC39.52■■■■□ 3.92
CCDC88BA6NC98 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC39.52■■■■□ 3.92
CCDC88BA6NC98 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC39.52■■■■□ 3.92
CCDC88BA6NC98 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC39.52■■■■□ 3.92
CCDC88BA6NC98 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
CCDC88BA6NC98 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC39.51■■■■□ 3.92
CCDC88BA6NC98 KRT18P14-201ENST00000534205 1250 ntBASIC39.51■■■■□ 3.92
CCDC88BA6NC98 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC39.51■■■■□ 3.92
CCDC88BA6NC98 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC39.51■■■■□ 3.92
CCDC88BA6NC98 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC39.51■■■■□ 3.91
CCDC88BA6NC98 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC39.5■■■■□ 3.91
CCDC88BA6NC98 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC39.5■■■■□ 3.91
CCDC88BA6NC98 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms