Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV3A0A0B4J244 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV3A0A0B4J244 AC079630.1-202ENST00000618127 1840 ntBASIC18.12■□□□□ 0.49
TRAV3A0A0B4J244 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV3A0A0B4J244 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV3A0A0B4J244 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV3A0A0B4J244 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV3A0A0B4J244 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV3A0A0B4J244 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC18.11■□□□□ 0.49
TRAV3A0A0B4J244 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV3A0A0B4J244 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV3A0A0B4J244 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV3A0A0B4J244 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV3A0A0B4J244 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TRAV3A0A0B4J244 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV3A0A0B4J244 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 AC004448.1-201ENST00000458332 883 ntBASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 AL033527.3-201ENST00000566366 1196 ntBASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAV3A0A0B4J244 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAV3A0A0B4J244 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV3A0A0B4J244 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV3A0A0B4J244 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV3A0A0B4J244 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
TRAV3A0A0B4J244 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV3A0A0B4J244 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRAV3A0A0B4J244 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 AC012354.3-201ENST00000623734 483 ntBASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV3A0A0B4J244 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 AC103834.1-201ENST00000520383 144 ntBASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV3A0A0B4J244 KRT8P33-201ENST00000508125 1423 ntBASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 MIR4508-201ENST00000584178 70 ntBASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 GUSBP5-202ENST00000510805 1989 ntBASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV3A0A0B4J244 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV3A0A0B4J244 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV3A0A0B4J244 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.05■□□□□ 0.48
TRAV3A0A0B4J244 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV3A0A0B4J244 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV3A0A0B4J244 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC18.05■□□□□ 0.48
TRAV3A0A0B4J244 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV3A0A0B4J244 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.05■□□□□ 0.48
TRAV3A0A0B4J244 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV3A0A0B4J244 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV3A0A0B4J244 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV3A0A0B4J244 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV3A0A0B4J244 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV3A0A0B4J244 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV3A0A0B4J244 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.04■□□□□ 0.48
TRAV3A0A0B4J244 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.04■□□□□ 0.48
TRAV3A0A0B4J244 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV3A0A0B4J244 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV3A0A0B4J244 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms