Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC005332.2-201ENST00000590010 930 ntBASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 AC136475.7-201ENST00000602949 592 ntBASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 Z82244.2-201ENST00000632196 448 ntBASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 CDK7-201ENST00000256443 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 RN7SKP255-201ENST00000363442 313 ntBASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 RN7SKP203-201ENST00000363618 332 ntBASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 RN7SKP71-201ENST00000364558 318 ntBASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 7SK.1-201ENST00000365328 331 ntBASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 AL358876.2-201ENST00000424689 477 ntTSL 3 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 NR1I3-210ENST00000437437 973 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 AC067942.1-202ENST00000471756 1057 ntBASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 CA6-205ENST00000480186 1493 ntTSL 2 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 MEIS2-215ENST00000559561 1442 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
SHANK3Q9BYB0 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 STT3A-211ENST00000529196 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 DLX4-206ENST00000611342 1662 ntBASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 AC114781.1-201ENST00000450559 1028 ntBASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 AC022966.2-201ENST00000587434 367 ntBASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 AL033381.2-201ENST00000603854 732 ntBASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 COG6-212ENST00000630730 186 ntTSL 5 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 OLFML1-204ENST00000530135 1620 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 AC124319.4-201ENST00000622931 2161 ntBASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 CREB3L4-203ENST00000368601 950 ntTSL 2 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 ASLP1-201ENST00000428790 637 ntBASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 CA5BP1-205ENST00000435806 1064 ntBASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 LINC02328-202ENST00000554647 522 ntTSL 4 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 DUX4L33-201ENST00000635217 958 ntBASIC17.5■□□□□ 0.39
SHANK3Q9BYB0 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 CNOT4-204ENST00000414802 1687 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms