Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.35■□□□□ 0.21
COL4A5P29400 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 AC020763.3-201ENST00000625095 2904 ntBASIC16.35■□□□□ 0.21
COL4A5P29400 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC16.35■□□□□ 0.21
COL4A5P29400 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
COL4A5P29400 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 LINC00552-201ENST00000625151 2579 ntBASIC16.35■□□□□ 0.21
COL4A5P29400 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 IQCF1-201ENST00000310914 695 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC16.34■□□□□ 0.21
COL4A5P29400 AC105443.1-201ENST00000433754 712 ntBASIC16.34■□□□□ 0.21
COL4A5P29400 AC067942.1-202ENST00000471756 1057 ntBASIC16.34■□□□□ 0.21
COL4A5P29400 RN7SL22P-201ENST00000471800 269 ntBASIC16.34■□□□□ 0.21
COL4A5P29400 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC16.34■□□□□ 0.21
COL4A5P29400 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC16.34■□□□□ 0.21
COL4A5P29400 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
COL4A5P29400 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 ERG-211ENST00000453032 1595 ntTSL 2 BASIC16.34■□□□□ 0.21
COL4A5P29400 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
COL4A5P29400 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
COL4A5P29400 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC16.34■□□□□ 0.21
COL4A5P29400 PIGB-202ENST00000539642 1668 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
COL4A5P29400 DDC-212ENST00000615193 1674 ntTSL 3 BASIC16.34■□□□□ 0.21
COL4A5P29400 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.34■□□□□ 0.21
COL4A5P29400 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC16.34■□□□□ 0.21
COL4A5P29400 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
COL4A5P29400 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
COL4A5P29400 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.34■□□□□ 0.21
COL4A5P29400 AL928654.5-201ENST00000624831 2501 ntBASIC16.34■□□□□ 0.21
COL4A5P29400 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A5P29400 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC16.34■□□□□ 0.21
COL4A5P29400 THAP4-203ENST00000402545 833 ntTSL 5 BASIC16.34■□□□□ 0.21
COL4A5P29400 SNORA50D-201ENST00000408059 134 ntBASIC16.34■□□□□ 0.21
COL4A5P29400 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC16.34■□□□□ 0.21
COL4A5P29400 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC16.34■□□□□ 0.21
COL4A5P29400 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC16.34■□□□□ 0.21
COL4A5P29400 CCNL2P1-201ENST00000512846 969 ntBASIC16.34■□□□□ 0.21
COL4A5P29400 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC16.34■□□□□ 0.21
COL4A5P29400 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC16.34■□□□□ 0.21
COL4A5P29400 AC136475.7-201ENST00000602949 592 ntBASIC16.34■□□□□ 0.21
COL4A5P29400 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A5P29400 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A5P29400 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC16.33■□□□□ 0.21
COL4A5P29400 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A5P29400 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A5P29400 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC16.33■□□□□ 0.21
COL4A5P29400 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
COL4A5P29400 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A5P29400 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A5P29400 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A5P29400 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A5P29400 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A5P29400 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A5P29400 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.33■□□□□ 0.2
COL4A5P29400 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.33■□□□□ 0.2
COL4A5P29400 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC16.33■□□□□ 0.2
COL4A5P29400 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A5P29400 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.33■□□□□ 0.2
COL4A5P29400 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A5P29400 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A5P29400 AL157832.2-205ENST00000597245 1649 ntBASIC16.33■□□□□ 0.2
COL4A5P29400 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC16.33■□□□□ 0.2
COL4A5P29400 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
COL4A5P29400 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
COL4A5P29400 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
COL4A5P29400 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A5P29400 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC16.33■□□□□ 0.2
COL4A5P29400 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
COL4A5P29400 AC104117.4-201ENST00000521486 847 ntBASIC16.33■□□□□ 0.2
COL4A5P29400 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
COL4A5P29400 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC16.33■□□□□ 0.2
COL4A5P29400 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC16.33■□□□□ 0.2
COL4A5P29400 GOLGA8IP-202ENST00000611635 2100 ntBASIC16.33■□□□□ 0.2
COL4A5P29400 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A5P29400 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
COL4A5P29400 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A5P29400 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A5P29400 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.32■□□□□ 0.2
COL4A5P29400 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 GBAP1-208ENST00000566701 1546 ntBASIC16.32■□□□□ 0.2
COL4A5P29400 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
COL4A5P29400 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms