Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
COL5A1P20908 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.15□□□□□ -0.3
COL5A1P20908 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC13.15□□□□□ -0.3
COL5A1P20908 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.15□□□□□ -0.3
COL5A1P20908 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.15□□□□□ -0.3
COL5A1P20908 FAU-201ENST00000279259 461 ntTSL 2 BASIC13.15□□□□□ -0.3
COL5A1P20908 KRT18P44-201ENST00000416086 1285 ntBASIC13.15□□□□□ -0.3
COL5A1P20908 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC13.15□□□□□ -0.3
COL5A1P20908 MARK2P17-201ENST00000498560 841 ntBASIC13.15□□□□□ -0.3
COL5A1P20908 AC026412.1-206ENST00000502273 206 ntBASIC13.15□□□□□ -0.3
COL5A1P20908 IGHVII-74-1-201ENST00000517572 241 ntBASIC13.15□□□□□ -0.3
COL5A1P20908 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
COL5A1P20908 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
COL5A1P20908 AC084262.1-201ENST00000567818 751 ntBASIC13.15□□□□□ -0.3
COL5A1P20908 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC13.15□□□□□ -0.3
COL5A1P20908 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
COL5A1P20908 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC13.15□□□□□ -0.3
COL5A1P20908 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
COL5A1P20908 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.15□□□□□ -0.3
COL5A1P20908 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.31
COL5A1P20908 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.31
COL5A1P20908 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
COL5A1P20908 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
COL5A1P20908 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
COL5A1P20908 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.14□□□□□ -0.31
COL5A1P20908 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 GRK6P1-201ENST00000400595 1711 ntBASIC13.14□□□□□ -0.31
COL5A1P20908 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 CCL19-202ENST00000378800 414 ntTSL 2 BASIC13.14□□□□□ -0.31
COL5A1P20908 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
COL5A1P20908 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC13.14□□□□□ -0.31
COL5A1P20908 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC13.14□□□□□ -0.31
COL5A1P20908 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
COL5A1P20908 AC104212.2-201ENST00000478813 628 ntBASIC13.14□□□□□ -0.31
COL5A1P20908 AC233724.9-201ENST00000511694 407 ntBASIC13.14□□□□□ -0.31
COL5A1P20908 AC023051.2-201ENST00000541141 460 ntBASIC13.14□□□□□ -0.31
COL5A1P20908 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC13.14□□□□□ -0.31
COL5A1P20908 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC13.14□□□□□ -0.31
COL5A1P20908 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC13.14□□□□□ -0.31
COL5A1P20908 RN7SL480P-201ENST00000581481 294 ntBASIC13.14□□□□□ -0.31
COL5A1P20908 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC13.14□□□□□ -0.31
COL5A1P20908 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC13.14□□□□□ -0.31
COL5A1P20908 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC13.14□□□□□ -0.31
COL5A1P20908 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 RCC2P5-201ENST00000492126 1487 ntBASIC13.14□□□□□ -0.31
COL5A1P20908 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
COL5A1P20908 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.14□□□□□ -0.31
COL5A1P20908 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 AC041040.2-201ENST00000622926 2899 ntBASIC13.14□□□□□ -0.31
COL5A1P20908 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.14□□□□□ -0.31
COL5A1P20908 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
COL5A1P20908 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.14□□□□□ -0.31
COL5A1P20908 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL5A1P20908 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.13□□□□□ -0.31
COL5A1P20908 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
COL5A1P20908 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
COL5A1P20908 RN7SKP212-201ENST00000410851 328 ntBASIC13.13□□□□□ -0.31
COL5A1P20908 MAGEA7P-201ENST00000436482 942 ntBASIC13.13□□□□□ -0.31
COL5A1P20908 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 DPY19L2P4-201ENST00000479881 442 ntBASIC13.13□□□□□ -0.31
COL5A1P20908 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL5A1P20908 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC13.13□□□□□ -0.31
COL5A1P20908 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC13.13□□□□□ -0.31
COL5A1P20908 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC13.13□□□□□ -0.31
COL5A1P20908 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC13.13□□□□□ -0.31
COL5A1P20908 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC13.13□□□□□ -0.31
COL5A1P20908 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC13.13□□□□□ -0.31
COL5A1P20908 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC13.13□□□□□ -0.31
COL5A1P20908 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms