Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
FOXA1P55317 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.73□□□□□ -0.21
FOXA1P55317 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.73□□□□□ -0.21
FOXA1P55317 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 EEF1DP1-201ENST00000585891 896 ntBASIC13.73□□□□□ -0.21
FOXA1P55317 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC13.73□□□□□ -0.21
FOXA1P55317 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC13.73□□□□□ -0.21
FOXA1P55317 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
FOXA1P55317 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 MKRN5P-201ENST00000445263 1467 ntBASIC13.73□□□□□ -0.21
FOXA1P55317 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
FOXA1P55317 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 FAM90A7P-201ENST00000382628 1395 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 FAM90A23P-201ENST00000400136 1395 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 AC087386.2-201ENST00000623212 4637 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 AHCYP4-201ENST00000419201 1315 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
FOXA1P55317 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 AC099336.1-201ENST00000417053 1171 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.72□□□□□ -0.21
FOXA1P55317 HLA-V-201ENST00000429037 534 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 XBP1P1-201ENST00000436573 652 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 AC234783.1-201ENST00000441761 496 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.72□□□□□ -0.21
FOXA1P55317 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.72□□□□□ -0.21
FOXA1P55317 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 AC005225.4-201ENST00000557330 545 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.72□□□□□ -0.21
FOXA1P55317 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 MIR6775-201ENST00000617557 69 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
FOXA1P55317 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
FOXA1P55317 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
FOXA1P55317 LINC01815-202ENST00000641468 1409 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA1P55317 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
FOXA1P55317 LINC01165-201ENST00000445190 1623 ntBASIC13.72□□□□□ -0.21
FOXA1P55317 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA1P55317 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC13.71□□□□□ -0.21
FOXA1P55317 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.21
FOXA1P55317 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
FOXA1P55317 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA1P55317 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA1P55317 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms