Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC11.72□□□□□ -0.53
CDX1P47902 BRWD1P1-201ENST00000401091 371 ntBASIC11.72□□□□□ -0.53
CDX1P47902 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC11.72□□□□□ -0.53
CDX1P47902 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC11.72□□□□□ -0.53
CDX1P47902 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC11.72□□□□□ -0.53
CDX1P47902 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC11.72□□□□□ -0.53
CDX1P47902 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC11.72□□□□□ -0.53
CDX1P47902 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC11.72□□□□□ -0.53
CDX1P47902 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 PES1-204ENST00000402284 2144 ntTSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
CDX1P47902 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
CDX1P47902 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC11.72□□□□□ -0.53
CDX1P47902 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 FOXN3-219ENST00000615335 2421 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC11.71□□□□□ -0.53
CDX1P47902 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC11.71□□□□□ -0.53
CDX1P47902 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
CDX1P47902 PIP5K1A-204ENST00000409426 3737 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
CDX1P47902 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC11.71□□□□□ -0.53
CDX1P47902 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC11.71□□□□□ -0.53
CDX1P47902 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
CDX1P47902 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC11.71□□□□□ -0.53
CDX1P47902 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
CDX1P47902 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
CDX1P47902 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC11.71□□□□□ -0.53
CDX1P47902 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 POM121L8P-201ENST00000417732 1281 ntBASIC11.71□□□□□ -0.53
CDX1P47902 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC11.71□□□□□ -0.53
CDX1P47902 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 ACTBP11-201ENST00000436287 1126 ntBASIC11.71□□□□□ -0.53
CDX1P47902 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 POM121L9P-203ENST00000441984 1285 ntBASIC11.71□□□□□ -0.53
CDX1P47902 HOMER2P2-201ENST00000451621 847 ntBASIC11.71□□□□□ -0.53
CDX1P47902 PFN1P12-201ENST00000455938 534 ntBASIC11.71□□□□□ -0.53
CDX1P47902 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 TPT1P11-201ENST00000458482 498 ntBASIC11.71□□□□□ -0.53
CDX1P47902 PFN2-215ENST00000497148 743 ntTSL 4 BASIC11.71□□□□□ -0.53
CDX1P47902 FTLP10-202ENST00000505798 471 ntBASIC11.71□□□□□ -0.53
CDX1P47902 AC092658.1-201ENST00000505836 891 ntBASIC11.71□□□□□ -0.53
CDX1P47902 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC11.71□□□□□ -0.53
CDX1P47902 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
CDX1P47902 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC11.71□□□□□ -0.53
CDX1P47902 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC11.71□□□□□ -0.53
CDX1P47902 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC11.71□□□□□ -0.53
CDX1P47902 RN7SL560P-201ENST00000577943 264 ntBASIC11.71□□□□□ -0.53
CDX1P47902 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
CDX1P47902 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC11.71□□□□□ -0.53
CDX1P47902 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC11.71□□□□□ -0.53
CDX1P47902 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CDX1P47902 PLEKHG3-203ENST00000471182 3106 ntTSL 5 BASIC11.71□□□□□ -0.53
CDX1P47902 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
CDX1P47902 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
CDX1P47902 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CDX1P47902 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CDX1P47902 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
CDX1P47902 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CDX1P47902 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CDX1P47902 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC11.71□□□□□ -0.54
CDX1P47902 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC11.71□□□□□ -0.54
CDX1P47902 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC11.71□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms