Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CNN2P8-201ENST00000421872 913 ntBASIC10.9□□□□□ -0.66
HLA-DMBP28068 GAS5-209ENST00000430245 723 ntTSL 3 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 AL035414.1-201ENST00000451327 857 ntBASIC10.9□□□□□ -0.66
HLA-DMBP28068 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 AL033527.4-201ENST00000641026 673 ntBASIC10.9□□□□□ -0.66
HLA-DMBP28068 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC10.9□□□□□ -0.67
HLA-DMBP28068 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC10.9□□□□□ -0.67
HLA-DMBP28068 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
HLA-DMBP28068 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
HLA-DMBP28068 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
HLA-DMBP28068 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
HLA-DMBP28068 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
HLA-DMBP28068 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.67
HLA-DMBP28068 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
HLA-DMBP28068 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 SHC1P1-201ENST00000425230 1745 ntBASIC10.89□□□□□ -0.67
HLA-DMBP28068 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 AC004241.5-201ENST00000623870 2448 ntBASIC10.89□□□□□ -0.67
HLA-DMBP28068 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 AL008718.2-201ENST00000609206 1313 ntBASIC10.89□□□□□ -0.67
HLA-DMBP28068 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 TNN-202ENST00000621086 4234 ntTSL 5 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 GOLGA8EP-201ENST00000530246 1959 ntBASIC10.89□□□□□ -0.67
HLA-DMBP28068 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 APOC3-202ENST00000375345 604 ntTSL 5 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 SKA2-202ENST00000437036 625 ntTSL 2 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 CHMP1AP1-201ENST00000445563 662 ntBASIC10.89□□□□□ -0.67
HLA-DMBP28068 HIST2H2BB-201ENST00000449108 381 ntBASIC10.89□□□□□ -0.67
HLA-DMBP28068 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 AC092658.1-201ENST00000505836 891 ntBASIC10.89□□□□□ -0.67
HLA-DMBP28068 AHRR-211ENST00000515206 462 ntTSL 5 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 AP006547.1-201ENST00000563435 692 ntBASIC10.89□□□□□ -0.67
HLA-DMBP28068 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 RN7SL219P-201ENST00000582872 296 ntBASIC10.89□□□□□ -0.67
HLA-DMBP28068 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
HLA-DMBP28068 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
HLA-DMBP28068 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms