Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
SDCBPO00560 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC12.15□□□□□ -0.46
SDCBPO00560 AC009093.2-202ENST00000620513 2079 ntBASIC12.15□□□□□ -0.46
SDCBPO00560 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
SDCBPO00560 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 EML1-203ENST00000334192 4064 ntTSL 5 BASIC12.15□□□□□ -0.46
SDCBPO00560 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
SDCBPO00560 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
SDCBPO00560 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC12.15□□□□□ -0.46
SDCBPO00560 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC12.15□□□□□ -0.46
SDCBPO00560 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC12.15□□□□□ -0.46
SDCBPO00560 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
SDCBPO00560 USP17L6P-201ENST00000382470 1197 ntBASIC12.15□□□□□ -0.46
SDCBPO00560 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 AL161932.2-201ENST00000435436 679 ntBASIC12.15□□□□□ -0.46
SDCBPO00560 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC12.15□□□□□ -0.46
SDCBPO00560 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC12.15□□□□□ -0.46
SDCBPO00560 AC007551.1-201ENST00000457394 519 ntBASIC12.15□□□□□ -0.46
SDCBPO00560 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC12.15□□□□□ -0.46
SDCBPO00560 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC12.15□□□□□ -0.46
SDCBPO00560 ALG3P1-201ENST00000508806 1114 ntBASIC12.15□□□□□ -0.46
SDCBPO00560 RPL8-205ENST00000527914 551 ntTSL 3 BASIC12.15□□□□□ -0.46
SDCBPO00560 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC12.15□□□□□ -0.46
SDCBPO00560 RPL28-206ENST00000558752 671 ntTSL 3 BASIC12.15□□□□□ -0.46
SDCBPO00560 AC027237.1-201ENST00000560942 655 ntBASIC12.15□□□□□ -0.46
SDCBPO00560 AC005586.2-201ENST00000563946 837 ntBASIC12.15□□□□□ -0.46
SDCBPO00560 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC12.15□□□□□ -0.46
SDCBPO00560 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC12.15□□□□□ -0.46
SDCBPO00560 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC12.15□□□□□ -0.46
SDCBPO00560 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC12.15□□□□□ -0.46
SDCBPO00560 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC12.15□□□□□ -0.46
SDCBPO00560 SRP9-204ENST00000619790 377 ntTSL 2 BASIC12.15□□□□□ -0.46
SDCBPO00560 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC12.15□□□□□ -0.46
SDCBPO00560 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 AC002472.3-201ENST00000640124 621 ntBASIC12.15□□□□□ -0.46
SDCBPO00560 PIAS2-201ENST00000324794 4543 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
SDCBPO00560 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC12.15□□□□□ -0.46
SDCBPO00560 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SDCBPO00560 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC12.15□□□□□ -0.47
SDCBPO00560 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
SDCBPO00560 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
SDCBPO00560 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
SDCBPO00560 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 GOLGA8EP-201ENST00000530246 1959 ntBASIC12.14□□□□□ -0.47
SDCBPO00560 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC12.14□□□□□ -0.47
SDCBPO00560 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC12.14□□□□□ -0.47
SDCBPO00560 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC12.14□□□□□ -0.47
SDCBPO00560 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC12.14□□□□□ -0.47
SDCBPO00560 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
SDCBPO00560 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC12.14□□□□□ -0.47
SDCBPO00560 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC12.14□□□□□ -0.47
SDCBPO00560 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 CALY-203ENST00000368558 825 ntTSL 5 BASIC12.14□□□□□ -0.47
SDCBPO00560 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC12.14□□□□□ -0.47
SDCBPO00560 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms