Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 AC027612.1-201ENST00000445234 2395 ntBASIC10.91□□□□□ -0.66
HLA-DMBP28068 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 AC068760.1-201ENST00000493579 1953 ntBASIC10.91□□□□□ -0.66
HLA-DMBP28068 MIR326-201ENST00000362220 95 ntBASIC10.91□□□□□ -0.66
HLA-DMBP28068 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 AC099336.1-201ENST00000417053 1171 ntBASIC10.91□□□□□ -0.66
HLA-DMBP28068 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 YBX1P6-201ENST00000442962 1002 ntBASIC10.91□□□□□ -0.66
HLA-DMBP28068 CSF2RBP1-201ENST00000447905 391 ntBASIC10.91□□□□□ -0.66
HLA-DMBP28068 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 MIR6799-201ENST00000620297 69 ntBASIC10.91□□□□□ -0.66
HLA-DMBP28068 RHOXF1P1-202ENST00000635473 501 ntBASIC10.91□□□□□ -0.66
HLA-DMBP28068 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 FAS-202ENST00000352159 1722 ntTSL 5 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 CR383656.2-201ENST00000548656 2254 ntBASIC10.91□□□□□ -0.66
HLA-DMBP28068 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC10.91□□□□□ -0.66
HLA-DMBP28068 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
HLA-DMBP28068 PCDHA6-201ENST00000378126 3267 ntBASIC10.9□□□□□ -0.66
HLA-DMBP28068 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 INVS-201ENST00000262456 2968 ntTSL 5 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC10.9□□□□□ -0.66
HLA-DMBP28068 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 AL136309.1-201ENST00000403917 691 ntBASIC10.9□□□□□ -0.66
HLA-DMBP28068 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
HLA-DMBP28068 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms