Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TPM4P67936 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
TPM4P67936 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC16.03■□□□□ 0.16
TPM4P67936 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
TPM4P67936 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 ACVR2A-201ENST00000241416 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 ABCA3-202ENST00000382381 6446 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
TPM4P67936 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 TPM3P8-201ENST00000330554 643 ntBASIC16.03■□□□□ 0.16
TPM4P67936 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.03■□□□□ 0.16
TPM4P67936 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TPM4P67936 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.03■□□□□ 0.16
TPM4P67936 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.03■□□□□ 0.16
TPM4P67936 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.03■□□□□ 0.16
TPM4P67936 CR392039.2-201ENST00000623182 509 ntBASIC16.03■□□□□ 0.16
TPM4P67936 ABCD1P2-201ENST00000429313 1601 ntBASIC16.03■□□□□ 0.16
TPM4P67936 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC16.03■□□□□ 0.16
TPM4P67936 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TPM4P67936 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TPM4P67936 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
TPM4P67936 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC16.03■□□□□ 0.16
TPM4P67936 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC16.03■□□□□ 0.16
TPM4P67936 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC16.03■□□□□ 0.16
TPM4P67936 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM4P67936 AC009093.2-202ENST00000620513 2079 ntBASIC16.03■□□□□ 0.16
TPM4P67936 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM4P67936 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM4P67936 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TPM4P67936 DLX4-206ENST00000611342 1662 ntBASIC16.02■□□□□ 0.16
TPM4P67936 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
TPM4P67936 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM4P67936 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM4P67936 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TPM4P67936 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM4P67936 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TPM4P67936 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC16.02■□□□□ 0.16
TPM4P67936 MRVI1-201ENST00000423302 6126 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
TPM4P67936 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM4P67936 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.02■□□□□ 0.16
TPM4P67936 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM4P67936 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM4P67936 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.02■□□□□ 0.16
TPM4P67936 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM4P67936 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.02■□□□□ 0.16
TPM4P67936 AC093214.1-201ENST00000511688 1107 ntBASIC16.02■□□□□ 0.16
TPM4P67936 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM4P67936 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM4P67936 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM4P67936 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TPM4P67936 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TPM4P67936 AC009118.2-201ENST00000613275 655 ntBASIC16.02■□□□□ 0.16
TPM4P67936 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.02■□□□□ 0.16
TPM4P67936 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.02■□□□□ 0.16
TPM4P67936 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.02■□□□□ 0.16
TPM4P67936 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TPM4P67936 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
TPM4P67936 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TPM4P67936 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC16.02■□□□□ 0.15
TPM4P67936 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC16.02■□□□□ 0.15
TPM4P67936 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
TPM4P67936 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TPM4P67936 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TPM4P67936 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
TPM4P67936 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TPM4P67936 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
TPM4P67936 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TPM4P67936 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TPM4P67936 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
TPM4P67936 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.02■□□□□ 0.15
TPM4P67936 ABCA2-202ENST00000341511 8063 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
TPM4P67936 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TPM4P67936 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
TPM4P67936 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM4P67936 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TPM4P67936 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TPM4P67936 OS9-206ENST00000435406 2346 ntTSL 2 BASIC16.01■□□□□ 0.15
TPM4P67936 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
TPM4P67936 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TPM4P67936 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TPM4P67936 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TPM4P67936 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms