Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSR1P43307 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.28■□□□□ 0.04
SSR1P43307 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.28■□□□□ 0.04
SSR1P43307 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.28■□□□□ 0.04
SSR1P43307 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.28■□□□□ 0.04
SSR1P43307 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SSR1P43307 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SSR1P43307 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.28■□□□□ 0.04
SSR1P43307 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SSR1P43307 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.28■□□□□ 0.04
SSR1P43307 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.28■□□□□ 0.04
SSR1P43307 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSR1P43307 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSR1P43307 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SSR1P43307 TFIP11-201ENST00000405938 2896 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SSR1P43307 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSR1P43307 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSR1P43307 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSR1P43307 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.28■□□□□ 0.04
SSR1P43307 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
SSR1P43307 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSR1P43307 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSR1P43307 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSR1P43307 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC15.27■□□□□ 0.04
SSR1P43307 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.27■□□□□ 0.04
SSR1P43307 AC092117.1-201ENST00000621230 3250 ntBASIC15.27■□□□□ 0.04
SSR1P43307 DDC-213ENST00000617822 1809 ntTSL 3 BASIC15.27■□□□□ 0.04
SSR1P43307 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC15.27■□□□□ 0.04
SSR1P43307 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSR1P43307 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSR1P43307 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSR1P43307 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.27■□□□□ 0.04
SSR1P43307 TUBB8P4-201ENST00000511806 1324 ntBASIC15.27■□□□□ 0.04
SSR1P43307 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSR1P43307 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSR1P43307 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSR1P43307 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SSR1P43307 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC15.27■□□□□ 0.04
SSR1P43307 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.27■□□□□ 0.04
SSR1P43307 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
SSR1P43307 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.27■□□□□ 0.04
SSR1P43307 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.27■□□□□ 0.04
SSR1P43307 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSR1P43307 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.27■□□□□ 0.04
SSR1P43307 AL355994.2-201ENST00000447882 704 ntBASIC15.27■□□□□ 0.04
SSR1P43307 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSR1P43307 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.04
SSR1P43307 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.27■□□□□ 0.04
SSR1P43307 AP006547.1-201ENST00000563435 692 ntBASIC15.27■□□□□ 0.04
SSR1P43307 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.27■□□□□ 0.04
SSR1P43307 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.27■□□□□ 0.04
SSR1P43307 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.27■□□□□ 0.04
SSR1P43307 RHOXF1P1-202ENST00000635473 501 ntBASIC15.27■□□□□ 0.04
SSR1P43307 AC105233.6-201ENST00000642093 218 ntBASIC15.27■□□□□ 0.04
SSR1P43307 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSR1P43307 AC130686.1-201ENST00000622936 2466 ntBASIC15.27■□□□□ 0.03
SSR1P43307 AC090643.2-201ENST00000623442 2029 ntBASIC15.27■□□□□ 0.03
SSR1P43307 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSR1P43307 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.27■□□□□ 0.03
SSR1P43307 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSR1P43307 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SSR1P43307 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
SSR1P43307 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSR1P43307 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSR1P43307 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.27■□□□□ 0.03
SSR1P43307 PDIA3P1-201ENST00000471856 1510 ntBASIC15.27■□□□□ 0.03
SSR1P43307 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC15.27■□□□□ 0.03
SSR1P43307 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC15.27■□□□□ 0.03
SSR1P43307 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.26■□□□□ 0.03
SSR1P43307 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.26■□□□□ 0.03
SSR1P43307 AC064801.2-201ENST00000625052 1303 ntBASIC15.26■□□□□ 0.03
SSR1P43307 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SSR1P43307 AC015909.5-201ENST00000624336 2266 ntBASIC15.26■□□□□ 0.03
SSR1P43307 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 MBLAC2-202ENST00000514906 1936 ntBASIC15.26■□□□□ 0.03
SSR1P43307 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.26■□□□□ 0.03
SSR1P43307 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
SSR1P43307 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.26■□□□□ 0.03
SSR1P43307 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.26■□□□□ 0.03
SSR1P43307 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.26■□□□□ 0.03
SSR1P43307 HOMER2P2-201ENST00000451621 847 ntBASIC15.26■□□□□ 0.03
SSR1P43307 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.26■□□□□ 0.03
SSR1P43307 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSR1P43307 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.26■□□□□ 0.03
SSR1P43307 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.26■□□□□ 0.03
SSR1P43307 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.26■□□□□ 0.03
SSR1P43307 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.26■□□□□ 0.03
SSR1P43307 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SSR1P43307 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC15.26■□□□□ 0.03
SSR1P43307 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms