Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC019070.1-201ENST00000415008 1024 ntBASIC14.53□□□□□ -0.08
COL9A1P20849 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC14.53□□□□□ -0.08
COL9A1P20849 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC14.53□□□□□ -0.08
COL9A1P20849 RN7SL128P-201ENST00000467883 305 ntBASIC14.53□□□□□ -0.08
COL9A1P20849 RN7SL487P-201ENST00000468140 344 ntBASIC14.53□□□□□ -0.08
COL9A1P20849 UCHL1-AS1-202ENST00000510073 451 ntTSL 3 BASIC14.53□□□□□ -0.08
COL9A1P20849 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC14.53□□□□□ -0.08
COL9A1P20849 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC14.53□□□□□ -0.08
COL9A1P20849 AL136298.3-201ENST00000556746 445 ntBASIC14.53□□□□□ -0.08
COL9A1P20849 AC010931.3-201ENST00000561647 554 ntTSL 3 BASIC14.53□□□□□ -0.08
COL9A1P20849 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC14.53□□□□□ -0.08
COL9A1P20849 AC126365.2-201ENST00000580630 379 ntBASIC14.53□□□□□ -0.08
COL9A1P20849 AL591471.1-201ENST00000621855 229 ntBASIC14.53□□□□□ -0.08
COL9A1P20849 AC005274.1-201ENST00000623460 802 ntBASIC14.53□□□□□ -0.08
COL9A1P20849 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL9A1P20849 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL9A1P20849 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL9A1P20849 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL9A1P20849 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.53□□□□□ -0.08
COL9A1P20849 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL9A1P20849 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL9A1P20849 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.53□□□□□ -0.08
COL9A1P20849 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL9A1P20849 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
COL9A1P20849 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL9A1P20849 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL9A1P20849 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL9A1P20849 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
COL9A1P20849 BRD7P5-201ENST00000299197 1822 ntBASIC14.52□□□□□ -0.08
COL9A1P20849 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL9A1P20849 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.52□□□□□ -0.08
COL9A1P20849 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL9A1P20849 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL9A1P20849 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL9A1P20849 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL9A1P20849 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL9A1P20849 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.52□□□□□ -0.08
COL9A1P20849 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL9A1P20849 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL9A1P20849 RPL13AP3-202ENST00000494676 1473 ntBASIC14.52□□□□□ -0.08
COL9A1P20849 AC007952.5-201ENST00000572818 1486 ntBASIC14.52□□□□□ -0.08
COL9A1P20849 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL9A1P20849 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL9A1P20849 AC083899.2-201ENST00000423285 1376 ntBASIC14.52□□□□□ -0.08
COL9A1P20849 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL9A1P20849 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.52□□□□□ -0.08
COL9A1P20849 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
COL9A1P20849 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.52□□□□□ -0.09
COL9A1P20849 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC14.52□□□□□ -0.09
COL9A1P20849 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC14.52□□□□□ -0.09
COL9A1P20849 HDGF-202ENST00000368206 960 ntTSL 5 BASIC14.52□□□□□ -0.09
COL9A1P20849 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC14.52□□□□□ -0.09
COL9A1P20849 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC14.52□□□□□ -0.09
COL9A1P20849 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
COL9A1P20849 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC14.52□□□□□ -0.09
COL9A1P20849 Z97198.1-201ENST00000452366 658 ntTSL 2 BASIC14.52□□□□□ -0.09
COL9A1P20849 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.52□□□□□ -0.09
COL9A1P20849 RN7SL340P-201ENST00000470792 296 ntBASIC14.52□□□□□ -0.09
COL9A1P20849 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC14.52□□□□□ -0.09
COL9A1P20849 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC14.52□□□□□ -0.09
COL9A1P20849 AC068987.2-201ENST00000565518 896 ntBASIC14.52□□□□□ -0.09
COL9A1P20849 AC105430.1-202ENST00000567477 483 ntTSL 3 BASIC14.52□□□□□ -0.09
COL9A1P20849 AL023583.1-201ENST00000607518 1143 ntBASIC14.52□□□□□ -0.09
COL9A1P20849 URAHP-205ENST00000610227 398 ntBASIC14.52□□□□□ -0.09
COL9A1P20849 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.52□□□□□ -0.09
COL9A1P20849 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
COL9A1P20849 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.52□□□□□ -0.09
COL9A1P20849 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC14.52□□□□□ -0.09
COL9A1P20849 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
COL9A1P20849 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.52□□□□□ -0.09
COL9A1P20849 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.52□□□□□ -0.09
COL9A1P20849 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.52□□□□□ -0.09
COL9A1P20849 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.52□□□□□ -0.09
COL9A1P20849 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
COL9A1P20849 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.52□□□□□ -0.09
COL9A1P20849 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.52□□□□□ -0.09
COL9A1P20849 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.52□□□□□ -0.09
COL9A1P20849 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL9A1P20849 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL9A1P20849 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL9A1P20849 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL9A1P20849 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL9A1P20849 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.51□□□□□ -0.09
COL9A1P20849 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL9A1P20849 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL9A1P20849 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms