Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SALL4P6-201ENST00000429385 1691 ntBASIC16.19■□□□□ 0.18
SMARCA1P28370 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 AC025183.3-201ENST00000623526 1482 ntBASIC16.19■□□□□ 0.18
SMARCA1P28370 PYY2-201ENST00000315776 282 ntBASIC16.19■□□□□ 0.18
SMARCA1P28370 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC16.19■□□□□ 0.18
SMARCA1P28370 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC16.19■□□□□ 0.18
SMARCA1P28370 AC007279.1-201ENST00000448547 837 ntBASIC16.19■□□□□ 0.18
SMARCA1P28370 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 NOC2LP1-201ENST00000450578 752 ntBASIC16.19■□□□□ 0.18
SMARCA1P28370 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.19■□□□□ 0.18
SMARCA1P28370 GRPEL2P1-201ENST00000453145 339 ntBASIC16.19■□□□□ 0.18
SMARCA1P28370 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
SMARCA1P28370 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
SMARCA1P28370 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 MT3-203ENST00000565838 421 ntTSL 3 BASIC16.19■□□□□ 0.18
SMARCA1P28370 AP005264.5-201ENST00000590066 467 ntBASIC16.19■□□□□ 0.18
SMARCA1P28370 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC16.19■□□□□ 0.18
SMARCA1P28370 AC091769.1-201ENST00000619576 568 ntBASIC16.19■□□□□ 0.18
SMARCA1P28370 AL161773.1-201ENST00000624845 863 ntBASIC16.19■□□□□ 0.18
SMARCA1P28370 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 BEND3P1-201ENST00000421591 1944 ntBASIC16.19■□□□□ 0.18
SMARCA1P28370 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SMARCA1P28370 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
SMARCA1P28370 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SMARCA1P28370 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC16.19■□□□□ 0.18
SMARCA1P28370 AC023794.5-201ENST00000564380 2157 ntBASIC16.19■□□□□ 0.18
SMARCA1P28370 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
SMARCA1P28370 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 AC019109.1-201ENST00000401725 1874 ntBASIC16.18■□□□□ 0.18
SMARCA1P28370 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 LINC02486-201ENST00000604157 3000 ntBASIC16.18■□□□□ 0.18
SMARCA1P28370 FTX-216ENST00000638985 1367 ntTSL 5 BASIC16.18■□□□□ 0.18
SMARCA1P28370 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC16.18■□□□□ 0.18
SMARCA1P28370 AC092573.1-201ENST00000433054 884 ntBASIC16.18■□□□□ 0.18
SMARCA1P28370 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC16.18■□□□□ 0.18
SMARCA1P28370 OR5BD1P-201ENST00000532527 817 ntBASIC16.18■□□□□ 0.18
SMARCA1P28370 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC16.18■□□□□ 0.18
SMARCA1P28370 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC16.18■□□□□ 0.18
SMARCA1P28370 AC087392.5-201ENST00000612517 489 ntBASIC16.18■□□□□ 0.18
SMARCA1P28370 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.18■□□□□ 0.18
SMARCA1P28370 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 MARK2P9-201ENST00000430958 1727 ntBASIC16.18■□□□□ 0.18
SMARCA1P28370 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 CETP-203ENST00000566128 1733 ntTSL 5 BASIC16.18■□□□□ 0.18
SMARCA1P28370 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 PHB-210ENST00000511832 1509 ntTSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
SMARCA1P28370 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SMARCA1P28370 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SMARCA1P28370 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SMARCA1P28370 AF013593.1-201ENST00000458074 1487 ntBASIC16.17■□□□□ 0.18
SMARCA1P28370 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
SMARCA1P28370 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SMARCA1P28370 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SMARCA1P28370 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SMARCA1P28370 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 AC091046.1-201ENST00000331871 207 ntBASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms