Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC12.45□□□□□ -0.42
COL8A1P27658 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.44□□□□□ -0.42
COL8A1P27658 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
COL8A1P27658 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 AC087386.2-201ENST00000623212 4637 ntBASIC12.44□□□□□ -0.42
COL8A1P27658 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 JPT2-203ENST00000382711 894 ntTSL 4 BASIC12.44□□□□□ -0.42
COL8A1P27658 AL157823.1-201ENST00000403727 628 ntBASIC12.44□□□□□ -0.42
COL8A1P27658 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC12.44□□□□□ -0.42
COL8A1P27658 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC12.44□□□□□ -0.42
COL8A1P27658 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 IGHV1-12-201ENST00000518307 205 ntBASIC12.44□□□□□ -0.42
COL8A1P27658 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC12.44□□□□□ -0.42
COL8A1P27658 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC12.44□□□□□ -0.42
COL8A1P27658 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC12.44□□□□□ -0.42
COL8A1P27658 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
COL8A1P27658 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC12.44□□□□□ -0.42
COL8A1P27658 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 FOXN3-AS2-201ENST00000554071 1262 ntBASIC12.44□□□□□ -0.42
COL8A1P27658 KRT8P2-201ENST00000556193 944 ntBASIC12.44□□□□□ -0.42
COL8A1P27658 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC12.44□□□□□ -0.42
COL8A1P27658 NEK4P3-201ENST00000604859 544 ntBASIC12.44□□□□□ -0.42
COL8A1P27658 GGNBP1-204ENST00000613113 887 ntBASIC12.44□□□□□ -0.42
COL8A1P27658 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 CBR3-AS1-213ENST00000623647 815 ntTSL 5 BASIC12.44□□□□□ -0.42
COL8A1P27658 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC12.44□□□□□ -0.42
COL8A1P27658 LCK-206ENST00000373564 2137 ntTSL 5 BASIC12.44□□□□□ -0.42
COL8A1P27658 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC12.44□□□□□ -0.42
COL8A1P27658 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL8A1P27658 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC12.43□□□□□ -0.42
COL8A1P27658 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
COL8A1P27658 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC12.43□□□□□ -0.42
COL8A1P27658 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
COL8A1P27658 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC12.43□□□□□ -0.42
COL8A1P27658 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms