Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 AL353637.1-201ENST00000451571 732 ntBASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 IGHJ2P-201ENST00000454480 60 ntBASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 RN7SL530P-201ENST00000485097 298 ntBASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 AL139385.1-201ENST00000611744 3272 ntBASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 CICP8-201ENST00000455800 2813 ntBASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 AL022313.4-201ENST00000562756 2046 ntBASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 CR383656.2-201ENST00000548656 2254 ntBASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 RNA5SP359-201ENST00000364838 113 ntBASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 AL022334.2-201ENST00000610000 484 ntBASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 MIR6769A-201ENST00000617340 73 ntBASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms