Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 MIR1307-201ENST00000408840 149 ntBASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 HNRNPA1P2-207ENST00000432375 960 ntBASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 IGHEP2-201ENST00000519308 1256 ntBASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 RN7SL121P-201ENST00000584223 273 ntBASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 AC139713.2-207ENST00000641556 1292 ntBASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 AL139158.3-201ENST00000641212 1562 ntBASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 AC013268.4-201ENST00000637413 2228 ntBASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.82□□□□□ -0.2
LYSMD4Q5XG99 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 DKKL1P1-201ENST00000400550 698 ntBASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 AC078814.4-201ENST00000546650 327 ntBASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 URAHP-205ENST00000610227 398 ntBASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 ESR1-214ENST00000638569 132 ntTSL 5 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
LYSMD4Q5XG99 TCAF2P1-201ENST00000291129 2421 ntBASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms