Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A3P25940 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 BPIFB1-201ENST00000253354 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A3P25940 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC17.21■□□□□ 0.35
COL5A3P25940 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A3P25940 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC17.21■□□□□ 0.35
COL5A3P25940 UGT1A12P-201ENST00000447084 853 ntBASIC17.21■□□□□ 0.35
COL5A3P25940 RN7SL789P-201ENST00000478944 293 ntBASIC17.21■□□□□ 0.35
COL5A3P25940 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A3P25940 LINC02376-201ENST00000536330 724 ntTSL 3 BASIC17.21■□□□□ 0.35
COL5A3P25940 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
COL5A3P25940 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL5A3P25940 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
COL5A3P25940 AL031587.5-201ENST00000624344 1849 ntBASIC17.21■□□□□ 0.34
COL5A3P25940 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
COL5A3P25940 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
COL5A3P25940 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
COL5A3P25940 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC17.2■□□□□ 0.34
COL5A3P25940 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC17.2■□□□□ 0.34
COL5A3P25940 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC17.2■□□□□ 0.34
COL5A3P25940 RPE-208ENST00000436630 1128 ntTSL 2 BASIC17.2■□□□□ 0.34
COL5A3P25940 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC17.2■□□□□ 0.34
COL5A3P25940 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC17.2■□□□□ 0.34
COL5A3P25940 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC17.2■□□□□ 0.34
COL5A3P25940 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 AC020763.3-201ENST00000625095 2904 ntBASIC17.2■□□□□ 0.34
COL5A3P25940 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
COL5A3P25940 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A3P25940 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A3P25940 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC17.19■□□□□ 0.34
COL5A3P25940 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A3P25940 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A3P25940 VPREB3-201ENST00000248948 610 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A3P25940 AL591499.1-201ENST00000307155 1153 ntBASIC17.19■□□□□ 0.34
COL5A3P25940 VPREB3-202ENST00000398465 503 ntTSL 3 BASIC17.19■□□□□ 0.34
COL5A3P25940 RAB34-211ENST00000450529 1184 ntTSL 2 BASIC17.19■□□□□ 0.34
COL5A3P25940 RN7SL846P-201ENST00000467429 292 ntBASIC17.19■□□□□ 0.34
COL5A3P25940 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC17.19■□□□□ 0.34
COL5A3P25940 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC17.19■□□□□ 0.34
COL5A3P25940 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC17.19■□□□□ 0.34
COL5A3P25940 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC17.19■□□□□ 0.34
COL5A3P25940 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC17.19■□□□□ 0.34
COL5A3P25940 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC17.19■□□□□ 0.34
COL5A3P25940 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
COL5A3P25940 AL590556.2-202ENST00000636906 844 ntBASIC17.19■□□□□ 0.34
COL5A3P25940 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A3P25940 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
COL5A3P25940 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.19■□□□□ 0.34
COL5A3P25940 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A3P25940 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A3P25940 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A3P25940 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A3P25940 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC17.19■□□□□ 0.34
COL5A3P25940 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC17.19■□□□□ 0.34
COL5A3P25940 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC17.18■□□□□ 0.34
COL5A3P25940 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 AP001331.1-201ENST00000413008 1015 ntBASIC17.18■□□□□ 0.34
COL5A3P25940 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC17.18■□□□□ 0.34
COL5A3P25940 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
COL5A3P25940 AC022447.5-201ENST00000504817 392 ntBASIC17.18■□□□□ 0.34
COL5A3P25940 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC17.18■□□□□ 0.34
COL5A3P25940 EEF1DP7-201ENST00000580496 513 ntBASIC17.18■□□□□ 0.34
COL5A3P25940 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC17.18■□□□□ 0.34
COL5A3P25940 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC17.18■□□□□ 0.34
COL5A3P25940 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
COL5A3P25940 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 AL157832.2-205ENST00000597245 1649 ntBASIC17.18■□□□□ 0.34
COL5A3P25940 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
COL5A3P25940 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL5A3P25940 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC17.18■□□□□ 0.34
COL5A3P25940 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 ZSCAN5DP-201ENST00000600684 1488 ntBASIC17.18■□□□□ 0.34
COL5A3P25940 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
COL5A3P25940 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms