Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 ZNF114-201ENST00000315849 2206 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 AC246680.1-201ENST00000444624 494 ntTSL 3 BASIC14.18□□□□□ -0.14
COL6A3P12111 AL356479.1-202ENST00000456933 714 ntTSL 3 BASIC14.18□□□□□ -0.14
COL6A3P12111 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC14.18□□□□□ -0.14
COL6A3P12111 AC110285.1-201ENST00000572077 665 ntTSL 3 BASIC14.18□□□□□ -0.14
COL6A3P12111 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC14.18□□□□□ -0.14
COL6A3P12111 FAM95B1-214ENST00000593216 759 ntTSL 5 BASIC14.18□□□□□ -0.14
COL6A3P12111 FAM231B-201ENST00000600179 510 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
COL6A3P12111 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
COL6A3P12111 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 HTR3E-206ENST00000440596 1449 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.17□□□□□ -0.14
COL6A3P12111 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
COL6A3P12111 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
COL6A3P12111 PPP1R7-206ENST00000406106 965 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 TXNDC9-205ENST00000434323 733 ntTSL 5 BASIC14.17□□□□□ -0.14
COL6A3P12111 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A3P12111 AC021678.2-201ENST00000521731 887 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A3P12111 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC14.17□□□□□ -0.14
COL6A3P12111 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A3P12111 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.17□□□□□ -0.14
COL6A3P12111 SLC22A18AS-201ENST00000455942 697 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 AC113346.2-201ENST00000502684 457 ntTSL 5 BASIC14.17□□□□□ -0.14
COL6A3P12111 AL354993.2-201ENST00000558738 542 ntTSL 4 BASIC14.17□□□□□ -0.14
COL6A3P12111 AC092368.1-201ENST00000568014 733 ntBASIC14.17□□□□□ -0.14
COL6A3P12111 SRGAP3-AS2-203ENST00000600323 1294 ntTSL 5 BASIC14.17□□□□□ -0.14
COL6A3P12111 PRKN-210ENST00000612540 603 ntTSL 5 BASIC14.17□□□□□ -0.14
COL6A3P12111 KIAA0391-211ENST00000605870 1406 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
COL6A3P12111 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
COL6A3P12111 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC14.17□□□□□ -0.14
COL6A3P12111 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A3P12111 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
COL6A3P12111 OOEP-201ENST00000370359 478 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 CA6-201ENST00000377436 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 CA6-202ENST00000377442 747 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 AP001341.1-201ENST00000409758 763 ntTSL 3 BASIC14.16□□□□□ -0.14
COL6A3P12111 TUSC8-201ENST00000432701 978 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC14.16□□□□□ -0.14
COL6A3P12111 LAIR1-217ENST00000474878 814 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC14.16□□□□□ -0.14
COL6A3P12111 SARS2-211ENST00000598831 665 ntTSL 5 BASIC14.16□□□□□ -0.14
COL6A3P12111 AC022392.1-201ENST00000609403 744 ntBASIC14.16□□□□□ -0.14
COL6A3P12111 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
COL6A3P12111 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.16□□□□□ -0.14
COL6A3P12111 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.16□□□□□ -0.14
COL6A3P12111 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
COL6A3P12111 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 RPL15-202ENST00000354811 820 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 SPINK4-201ENST00000379721 402 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 AL357833.2-202ENST00000413757 372 ntTSL 3 BASIC14.16□□□□□ -0.14
COL6A3P12111 AC007255.1-202ENST00000447171 889 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 RPL29P2-202ENST00000498671 657 ntBASIC14.16□□□□□ -0.14
COL6A3P12111 NUP210P2-201ENST00000510577 282 ntBASIC14.16□□□□□ -0.14
COL6A3P12111 MESTP2-201ENST00000559787 889 ntBASIC14.16□□□□□ -0.14
COL6A3P12111 MARVELD3-205ENST00000567501 582 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
COL6A3P12111 RN7SL134P-201ENST00000579756 303 ntBASIC14.16□□□□□ -0.14
COL6A3P12111 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC14.16□□□□□ -0.14
COL6A3P12111 RPS9-213ENST00000626547 476 ntTSL 2 BASIC14.16□□□□□ -0.14
COL6A3P12111 AC092471.1-202ENST00000637160 999 ntBASIC14.16□□□□□ -0.14
COL6A3P12111 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.16□□□□□ -0.14
COL6A3P12111 SIRPG-205ENST00000381583 1383 ntTSL 5 BASIC14.16□□□□□ -0.14
COL6A3P12111 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.16□□□□□ -0.14
COL6A3P12111 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 SH3GLB2-206ENST00000417224 1468 ntTSL 5 BASIC14.16□□□□□ -0.14
COL6A3P12111 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 CNN2P9-201ENST00000417134 909 ntBASIC14.16□□□□□ -0.14
COL6A3P12111 CNTFR-AS1-201ENST00000436360 892 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 RPL21P135-201ENST00000442539 791 ntBASIC14.16□□□□□ -0.14
COL6A3P12111 CNTFR-AS1-203ENST00000453642 723 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 AP000926.2-201ENST00000469983 358 ntBASIC14.16□□□□□ -0.14
COL6A3P12111 LINC01194-203ENST00000513051 670 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 AC090095.1-201ENST00000519275 871 ntBASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms