Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
KIAA1549Q9HCM3 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AC108734.2-201ENST00000420887 1069 ntBASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 RPL7P35-201ENST00000446943 740 ntBASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 SIGLEC22P-201ENST00000599104 714 ntBASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AC117489.1-201ENST00000625169 3217 ntBASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AC079781.5-202ENST00000641784 3743 ntBASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 GUSBP10-201ENST00000417412 665 ntBASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 RN7SL564P-201ENST00000496309 250 ntBASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AC002044.2-201ENST00000624910 970 ntBASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 AGAP10P-201ENST00000454844 2418 ntBASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
KIAA1549Q9HCM3 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 AC098934.1-203ENST00000442868 1262 ntBASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 AC068867.1-201ENST00000559855 150 ntBASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 AC105137.3-201ENST00000617588 984 ntBASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 HELLS-212ENST00000630929 400 ntTSL 5 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 FAM90A12P-201ENST00000519497 2375 ntBASIC12.55□□□□□ -0.4
KIAA1549Q9HCM3 FAM90A24P-201ENST00000520792 2369 ntBASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms