Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 COX5BP8-201ENST00000416911 349 ntBASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 KRT43P-201ENST00000434019 910 ntBASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 CNN2P10-201ENST00000443067 918 ntBASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 STX3-207ENST00000633708 3111 ntTSL 5 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 HADH-202ENST00000403312 1752 ntTSL 5 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLHC1Q8NHS4 AC019294.4-201ENST00000561777 2905 ntBASIC13.77□□□□□ -0.2
CLHC1Q8NHS4 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CLHC1Q8NHS4 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CLHC1Q8NHS4 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
CLHC1Q8NHS4 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
CLHC1Q8NHS4 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CLHC1Q8NHS4 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CLHC1Q8NHS4 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 CALY-203ENST00000368558 825 ntTSL 5 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 AL645933.1-201ENST00000440087 609 ntBASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 PDIA3P1-201ENST00000471856 1510 ntBASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 AC132192.2-201ENST00000596206 1147 ntBASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 CECR7-204ENST00000609932 568 ntTSL 2 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 GOLGA8IP-202ENST00000611635 2100 ntBASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 RHOXF1P1-202ENST00000635473 501 ntBASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CLHC1Q8NHS4 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms