Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 AC009474.1-201ENST00000455096 1565 ntBASIC13.71□□□□□ -0.22
MSX2P35548 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC13.71□□□□□ -0.22
MSX2P35548 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
MSX2P35548 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.7□□□□□ -0.22
MSX2P35548 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
MSX2P35548 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.7□□□□□ -0.22
MSX2P35548 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC13.7□□□□□ -0.22
MSX2P35548 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 L3MBTL1-203ENST00000373135 3218 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
MSX2P35548 PAM-203ENST00000346918 3302 ntTSL 5 BASIC13.7□□□□□ -0.22
MSX2P35548 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.7□□□□□ -0.22
MSX2P35548 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
MSX2P35548 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.7□□□□□ -0.22
MSX2P35548 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC13.7□□□□□ -0.22
MSX2P35548 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.7□□□□□ -0.22
MSX2P35548 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.7□□□□□ -0.22
MSX2P35548 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC13.7□□□□□ -0.22
MSX2P35548 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.7□□□□□ -0.22
MSX2P35548 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC13.7□□□□□ -0.22
MSX2P35548 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC13.7□□□□□ -0.22
MSX2P35548 AL359711.2-201ENST00000563105 872 ntBASIC13.7□□□□□ -0.22
MSX2P35548 AC005586.2-201ENST00000563946 837 ntBASIC13.7□□□□□ -0.22
MSX2P35548 AC004449.1-201ENST00000564240 433 ntBASIC13.7□□□□□ -0.22
MSX2P35548 AC124283.3-201ENST00000570869 594 ntBASIC13.7□□□□□ -0.22
MSX2P35548 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC13.7□□□□□ -0.22
MSX2P35548 AL158211.3-201ENST00000607385 239 ntBASIC13.7□□□□□ -0.22
MSX2P35548 AC104506.1-201ENST00000609247 429 ntBASIC13.7□□□□□ -0.22
MSX2P35548 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC13.7□□□□□ -0.22
MSX2P35548 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.7□□□□□ -0.22
MSX2P35548 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 PCDHB17P-202ENST00000623466 3066 ntBASIC13.7□□□□□ -0.22
MSX2P35548 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
MSX2P35548 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
MSX2P35548 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
MSX2P35548 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC13.7□□□□□ -0.22
MSX2P35548 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 KRT8P28-201ENST00000433288 1390 ntBASIC13.7□□□□□ -0.22
MSX2P35548 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
MSX2P35548 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX2P35548 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
MSX2P35548 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
MSX2P35548 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC13.69□□□□□ -0.22
MSX2P35548 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
MSX2P35548 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX2P35548 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
MSX2P35548 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC13.69□□□□□ -0.22
MSX2P35548 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX2P35548 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
MSX2P35548 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
MSX2P35548 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 ACTBP8-201ENST00000403258 1108 ntBASIC13.69□□□□□ -0.22
MSX2P35548 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC13.69□□□□□ -0.22
MSX2P35548 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX2P35548 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
MSX2P35548 PUDPP3-201ENST00000445368 636 ntBASIC13.69□□□□□ -0.22
MSX2P35548 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX2P35548 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.69□□□□□ -0.22
MSX2P35548 IGHV3-42-201ENST00000520410 361 ntBASIC13.69□□□□□ -0.22
MSX2P35548 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.69□□□□□ -0.22
MSX2P35548 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.69□□□□□ -0.22
MSX2P35548 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.69□□□□□ -0.22
MSX2P35548 AC027237.1-201ENST00000560942 655 ntBASIC13.69□□□□□ -0.22
MSX2P35548 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX2P35548 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX2P35548 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC13.69□□□□□ -0.22
MSX2P35548 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
MSX2P35548 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
MSX2P35548 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
MSX2P35548 LINC00638-201ENST00000555578 2518 ntBASIC13.69□□□□□ -0.22
MSX2P35548 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC13.69□□□□□ -0.22
MSX2P35548 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 PDZRN3-208ENST00000479530 2778 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX2P35548 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
MSX2P35548 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX2P35548 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
MSX2P35548 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX2P35548 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms