Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 POM121L8P-201ENST00000417732 1281 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 C2orf27AP3-201ENST00000434123 579 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC12.25□□□□□ -0.45
SDCBPO00560 PNKD-204ENST00000436005 978 ntTSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 PTPA-220ENST00000436883 532 ntTSL 4 BASIC12.25□□□□□ -0.45
SDCBPO00560 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 POM121L9P-203ENST00000441984 1285 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 RN7SL837P-201ENST00000463010 287 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 RN7SL692P-201ENST00000464677 288 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC12.25□□□□□ -0.45
SDCBPO00560 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 FTLP10-202ENST00000505798 471 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC12.25□□□□□ -0.45
SDCBPO00560 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC12.25□□□□□ -0.45
SDCBPO00560 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC12.25□□□□□ -0.45
SDCBPO00560 POLE2-203ENST00000553805 496 ntTSL 2 BASIC12.25□□□□□ -0.45
SDCBPO00560 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC12.25□□□□□ -0.45
SDCBPO00560 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC12.25□□□□□ -0.45
SDCBPO00560 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 AC015936.2-201ENST00000593177 259 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 AC138696.2-201ENST00000607376 223 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 AL354718.3-201ENST00000616414 581 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 AC138466.3-201ENST00000619983 221 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 AP001002.3-201ENST00000623482 206 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 CR382287.1-201ENST00000623954 586 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 FKBP4P6-201ENST00000457486 1332 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
SDCBPO00560 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
SDCBPO00560 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC12.25□□□□□ -0.45
SDCBPO00560 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
SDCBPO00560 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
SDCBPO00560 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC12.25□□□□□ -0.45
SDCBPO00560 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC12.25□□□□□ -0.45
SDCBPO00560 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC12.25□□□□□ -0.45
SDCBPO00560 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 AGAP12P-201ENST00000585227 2359 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
SDCBPO00560 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
SDCBPO00560 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC12.24□□□□□ -0.45
SDCBPO00560 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC12.24□□□□□ -0.45
SDCBPO00560 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
SDCBPO00560 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC12.24□□□□□ -0.45
SDCBPO00560 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC12.24□□□□□ -0.45
SDCBPO00560 MESTP3-201ENST00000503460 968 ntBASIC12.24□□□□□ -0.45
SDCBPO00560 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC12.24□□□□□ -0.45
SDCBPO00560 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC12.24□□□□□ -0.45
SDCBPO00560 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
SDCBPO00560 AP001889.1-201ENST00000525414 633 ntBASIC12.24□□□□□ -0.45
SDCBPO00560 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC12.24□□□□□ -0.45
SDCBPO00560 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC12.24□□□□□ -0.45
SDCBPO00560 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC12.24□□□□□ -0.45
SDCBPO00560 AL118506.1-201ENST00000601296 3082 ntBASIC12.24□□□□□ -0.45
SDCBPO00560 AL138709.1-201ENST00000614840 1693 ntBASIC12.24□□□□□ -0.45
SDCBPO00560 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 AL928654.5-201ENST00000624831 2501 ntBASIC12.24□□□□□ -0.45
SDCBPO00560 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC12.24□□□□□ -0.45
SDCBPO00560 AL358472.5-202ENST00000641448 1267 ntBASIC12.24□□□□□ -0.45
SDCBPO00560 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SDCBPO00560 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC12.23□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms