Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 PHB-210ENST00000511832 1509 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 TDG-209ENST00000544861 1387 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 INE1-201ENST00000456273 945 ntBASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 AC145423.3-201ENST00000615987 467 ntBASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 AC002472.3-201ENST00000640124 621 ntBASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 CCT3-211ENST00000472765 1858 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 KIF3A-208ENST00000618515 3333 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC28BQ9BUN5 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 TUBB4AP1-201ENST00000450755 1325 ntBASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28BQ9BUN5 DFFBP1-201ENST00000433250 979 ntBASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms