Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ASMT-203ENST00000381241 1388 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
BRCA1P38398 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
BRCA1P38398 AC012358.2-201ENST00000430010 1434 ntBASIC16.65■□□□□ 0.26
BRCA1P38398 AL022725.1-201ENST00000436283 369 ntTSL 2 BASIC16.65■□□□□ 0.26
BRCA1P38398 AC009517.1-201ENST00000454750 570 ntBASIC16.65■□□□□ 0.26
BRCA1P38398 HNRNPA1P72-201ENST00000529511 967 ntBASIC16.65■□□□□ 0.26
BRCA1P38398 AL158032.2-201ENST00000616818 195 ntBASIC16.65■□□□□ 0.26
BRCA1P38398 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
BRCA1P38398 AC099795.2-201ENST00000639582 440 ntBASIC16.65■□□□□ 0.26
BRCA1P38398 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BRCA1P38398 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BRCA1P38398 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.64■□□□□ 0.25
BRCA1P38398 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.64■□□□□ 0.25
BRCA1P38398 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BRCA1P38398 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
BRCA1P38398 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
BRCA1P38398 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC16.64■□□□□ 0.25
BRCA1P38398 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
BRCA1P38398 AC012158.1-201ENST00000535684 1366 ntTSL 2 BASIC16.64■□□□□ 0.25
BRCA1P38398 SNORA30.1-201ENST00000363193 129 ntBASIC16.64■□□□□ 0.25
BRCA1P38398 CA6-201ENST00000377436 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
BRCA1P38398 CA6-202ENST00000377442 747 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
BRCA1P38398 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
BRCA1P38398 LINC00484-201ENST00000414768 561 ntTSL 5 BASIC16.64■□□□□ 0.25
BRCA1P38398 AC139143.1-201ENST00000441772 1207 ntBASIC16.64■□□□□ 0.25
BRCA1P38398 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
BRCA1P38398 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC16.64■□□□□ 0.25
BRCA1P38398 FAR1-IT1-201ENST00000525233 368 ntTSL 3 BASIC16.64■□□□□ 0.25
BRCA1P38398 FOS-205ENST00000555242 629 ntTSL 2 BASIC16.64■□□□□ 0.25
BRCA1P38398 AL136298.3-201ENST00000556746 445 ntBASIC16.64■□□□□ 0.25
BRCA1P38398 AC025219.1-201ENST00000559299 526 ntTSL 4 BASIC16.64■□□□□ 0.25
BRCA1P38398 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
BRCA1P38398 AC010319.4-201ENST00000593957 691 ntTSL 3 BASIC16.64■□□□□ 0.25
BRCA1P38398 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
BRCA1P38398 PACRG-AS3-204ENST00000620150 567 ntTSL 4 BASIC16.64■□□□□ 0.25
BRCA1P38398 MIEF1-215ENST00000637854 213 ntBASIC16.64■□□□□ 0.25
BRCA1P38398 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.64■□□□□ 0.25
BRCA1P38398 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
BRCA1P38398 AP000437.1-201ENST00000624057 2085 ntBASIC16.64■□□□□ 0.25
BRCA1P38398 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
BRCA1P38398 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
BRCA1P38398 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.64■□□□□ 0.25
BRCA1P38398 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
BRCA1P38398 AC022532.1-201ENST00000624563 1728 ntBASIC16.64■□□□□ 0.25
BRCA1P38398 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BRCA1P38398 OLFML1-204ENST00000530135 1620 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
BRCA1P38398 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.63■□□□□ 0.25
BRCA1P38398 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
BRCA1P38398 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC16.63■□□□□ 0.25
BRCA1P38398 LINC00337-201ENST00000429480 1302 ntTSL 2 BASIC16.63■□□□□ 0.25
BRCA1P38398 CD9-212ENST00000610354 1315 ntTSL 5 BASIC16.63■□□□□ 0.25
BRCA1P38398 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
BRCA1P38398 KRTAP10-11-201ENST00000334670 1237 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
BRCA1P38398 SOD1-202ENST00000389995 865 ntTSL 3 BASIC16.63■□□□□ 0.25
BRCA1P38398 TUBB8P9-201ENST00000422534 1276 ntBASIC16.63■□□□□ 0.25
BRCA1P38398 TUBB8P10-201ENST00000430210 1279 ntBASIC16.63■□□□□ 0.25
BRCA1P38398 SMUG1-213ENST00000506595 712 ntTSL 5 BASIC16.63■□□□□ 0.25
BRCA1P38398 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC16.63■□□□□ 0.25
BRCA1P38398 AC100858.2-201ENST00000531948 487 ntTSL 3 BASIC16.63■□□□□ 0.25
BRCA1P38398 PIGH-210ENST00000560722 903 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
BRCA1P38398 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC16.63■□□□□ 0.25
BRCA1P38398 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC16.63■□□□□ 0.25
BRCA1P38398 AC100778.4-201ENST00000581232 582 ntTSL 4 BASIC16.63■□□□□ 0.25
BRCA1P38398 FAM223B-202ENST00000598177 713 ntBASIC16.63■□□□□ 0.25
BRCA1P38398 BAP1-211ENST00000615113 489 ntBASIC16.63■□□□□ 0.25
BRCA1P38398 FAM223A-202ENST00000625204 713 ntBASIC16.63■□□□□ 0.25
BRCA1P38398 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC16.63■□□□□ 0.25
BRCA1P38398 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BRCA1P38398 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
BRCA1P38398 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BRCA1P38398 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BRCA1P38398 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BRCA1P38398 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
BRCA1P38398 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
BRCA1P38398 AL513497.1-201ENST00000624273 2083 ntBASIC16.63■□□□□ 0.25
BRCA1P38398 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.63■□□□□ 0.25
BRCA1P38398 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
BRCA1P38398 AC106872.9-201ENST00000512437 1393 ntBASIC16.63■□□□□ 0.25
BRCA1P38398 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BRCA1P38398 CICP6-201ENST00000457191 2729 ntBASIC16.63■□□□□ 0.25
BRCA1P38398 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.63■□□□□ 0.25
BRCA1P38398 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BRCA1P38398 HMGN1P4-201ENST00000419500 290 ntBASIC16.63■□□□□ 0.25
BRCA1P38398 AL121972.2-201ENST00000431108 556 ntTSL 4 BASIC16.63■□□□□ 0.25
BRCA1P38398 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC16.63■□□□□ 0.25
BRCA1P38398 SMCO4-202ENST00000525141 889 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
BRCA1P38398 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
BRCA1P38398 AC116914.2-201ENST00000571741 291 ntTSL 5 BASIC16.63■□□□□ 0.25
BRCA1P38398 AL356740.1-201ENST00000602192 1297 ntBASIC16.63■□□□□ 0.25
BRCA1P38398 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC16.63■□□□□ 0.25
BRCA1P38398 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.63■□□□□ 0.25
BRCA1P38398 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
BRCA1P38398 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC16.62■□□□□ 0.25
BRCA1P38398 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.62■□□□□ 0.25
BRCA1P38398 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms