Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 GRPEL2P1-201ENST00000453145 339 ntBASIC16.77■□□□□ 0.28
HLA-DOAP06340 RN7SL818P-201ENST00000485099 259 ntBASIC16.77■□□□□ 0.28
HLA-DOAP06340 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 CTBP2P4-201ENST00000513884 920 ntBASIC16.77■□□□□ 0.28
HLA-DOAP06340 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 RN7SL725P-201ENST00000606439 259 ntBASIC16.77■□□□□ 0.28
HLA-DOAP06340 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 KRT8P18-201ENST00000413425 1445 ntBASIC16.77■□□□□ 0.27
HLA-DOAP06340 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC16.77■□□□□ 0.27
HLA-DOAP06340 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HLA-DOAP06340 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HLA-DOAP06340 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
HLA-DOAP06340 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HLA-DOAP06340 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
HLA-DOAP06340 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.77■□□□□ 0.27
HLA-DOAP06340 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
HLA-DOAP06340 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 HSPA8P5-201ENST00000456928 2069 ntBASIC16.76■□□□□ 0.27
HLA-DOAP06340 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 CSNK1G2P1-201ENST00000442675 955 ntBASIC16.76■□□□□ 0.27
HLA-DOAP06340 RN7SL788P-201ENST00000460504 316 ntBASIC16.76■□□□□ 0.27
HLA-DOAP06340 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 RN7SL455P-201ENST00000580629 282 ntBASIC16.76■□□□□ 0.27
HLA-DOAP06340 RN7SL357P-201ENST00000581065 298 ntBASIC16.76■□□□□ 0.27
HLA-DOAP06340 AP005264.5-201ENST00000590066 467 ntBASIC16.76■□□□□ 0.27
HLA-DOAP06340 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DOAP06340 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.76■□□□□ 0.27
HLA-DOAP06340 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 TUBB8P4-201ENST00000511806 1324 ntBASIC16.75■□□□□ 0.27
HLA-DOAP06340 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 RN7SL564P-201ENST00000496309 250 ntBASIC16.75■□□□□ 0.27
HLA-DOAP06340 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 AC068867.1-201ENST00000559855 150 ntBASIC16.75■□□□□ 0.27
HLA-DOAP06340 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 GAS7-216ENST00000583882 553 ntTSL 5 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms