Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.84■■□□□ 1.09
PCDHGA1Q9Y5H4 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHGA1Q9Y5H4 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHGA1Q9Y5H4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.83■■□□□ 1.09
PCDHGA1Q9Y5H4 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.83■■□□□ 1.09
PCDHGA1Q9Y5H4 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.83■■□□□ 1.09
PCDHGA1Q9Y5H4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.83■■□□□ 1.09
PCDHGA1Q9Y5H4 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHGA1Q9Y5H4 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCDHGA1Q9Y5H4 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCDHGA1Q9Y5H4 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.83■■□□□ 1.08
PCDHGA1Q9Y5H4 AC141586.4-201ENST00000624558 1573 ntBASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 AC092803.2-201ENST00000564287 1899 ntBASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.82■■□□□ 1.08
PCDHGA1Q9Y5H4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 ID1-201ENST00000376105 1233 ntBASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 AC012414.1-201ENST00000556676 535 ntBASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHGA1Q9Y5H4 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDHGA1Q9Y5H4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 AC004911.1-201ENST00000416316 871 ntBASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.79■■□□□ 1.08
PCDHGA1Q9Y5H4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
PCDHGA1Q9Y5H4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
PCDHGA1Q9Y5H4 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
PCDHGA1Q9Y5H4 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
PCDHGA1Q9Y5H4 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
PCDHGA1Q9Y5H4 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDHGA1Q9Y5H4 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDHGA1Q9Y5H4 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHGA1Q9Y5H4 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.78■■□□□ 1.08
PCDHGA1Q9Y5H4 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHGA1Q9Y5H4 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHGA1Q9Y5H4 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.77■■□□□ 1.08
PCDHGA1Q9Y5H4 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
PCDHGA1Q9Y5H4 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.77■■□□□ 1.08
PCDHGA1Q9Y5H4 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.77■■□□□ 1.08
PCDHGA1Q9Y5H4 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHGA1Q9Y5H4 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
PCDHGA1Q9Y5H4 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHGA1Q9Y5H4 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHGA1Q9Y5H4 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.77■■□□□ 1.08
PCDHGA1Q9Y5H4 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHGA1Q9Y5H4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
PCDHGA1Q9Y5H4 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDHGA1Q9Y5H4 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHGA1Q9Y5H4 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHGA1Q9Y5H4 CCDC92B-201ENST00000575506 885 ntBASIC21.76■■□□□ 1.07
PCDHGA1Q9Y5H4 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHGA1Q9Y5H4 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHGA1Q9Y5H4 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHGA1Q9Y5H4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms