Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 TMEM191A-211ENST00000637163 1067 ntBASIC26.06■■□□□ 1.76
PTPN22Q9Y2R2 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PTPN22Q9Y2R2 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.05■■□□□ 1.76
PTPN22Q9Y2R2 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
PTPN22Q9Y2R2 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC26.05■■□□□ 1.76
PTPN22Q9Y2R2 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
PTPN22Q9Y2R2 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
PTPN22Q9Y2R2 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
PTPN22Q9Y2R2 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
PTPN22Q9Y2R2 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC26.04■■□□□ 1.76
PTPN22Q9Y2R2 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PTPN22Q9Y2R2 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTPN22Q9Y2R2 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC26.04■■□□□ 1.76
PTPN22Q9Y2R2 RAP2CP1-201ENST00000605103 478 ntBASIC26.04■■□□□ 1.76
PTPN22Q9Y2R2 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PTPN22Q9Y2R2 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTPN22Q9Y2R2 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
PTPN22Q9Y2R2 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PTPN22Q9Y2R2 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTPN22Q9Y2R2 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 IGHV3-19-201ENST00000521488 291 ntBASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
PTPN22Q9Y2R2 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTPN22Q9Y2R2 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC26.02■■□□□ 1.76
PTPN22Q9Y2R2 STK32C-205ENST00000456004 607 ntTSL 2 BASIC26.02■■□□□ 1.76
PTPN22Q9Y2R2 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC26.02■■□□□ 1.76
PTPN22Q9Y2R2 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC26.02■■□□□ 1.76
PTPN22Q9Y2R2 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.02■■□□□ 1.76
PTPN22Q9Y2R2 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.01■■□□□ 1.76
PTPN22Q9Y2R2 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC26.01■■□□□ 1.75
PTPN22Q9Y2R2 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
PTPN22Q9Y2R2 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
PTPN22Q9Y2R2 LINC02228-203ENST00000641970 1355 ntBASIC26.01■■□□□ 1.75
PTPN22Q9Y2R2 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC26■■□□□ 1.75
PTPN22Q9Y2R2 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC26■■□□□ 1.75
PTPN22Q9Y2R2 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
PTPN22Q9Y2R2 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
PTPN22Q9Y2R2 AC097639.1-201ENST00000565519 1891 ntBASIC26■■□□□ 1.75
PTPN22Q9Y2R2 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 CDCA4P2-201ENST00000441182 718 ntBASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 AC104771.1-201ENST00000603335 964 ntBASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 pRNA.6-201ENST00000610482 90 ntBASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 pRNA.5-201ENST00000612139 90 ntBASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 pRNA.11-201ENST00000618423 90 ntBASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 pRNA.13-201ENST00000619112 90 ntBASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.99■■□□□ 1.75
PTPN22Q9Y2R2 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PTPN22Q9Y2R2 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.98■■□□□ 1.75
PTPN22Q9Y2R2 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC25.98■■□□□ 1.75
PTPN22Q9Y2R2 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PTPN22Q9Y2R2 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PTPN22Q9Y2R2 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PTPN22Q9Y2R2 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC25.98■■□□□ 1.75
PTPN22Q9Y2R2 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
PTPN22Q9Y2R2 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PTPN22Q9Y2R2 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PTPN22Q9Y2R2 AC135731.1-201ENST00000569415 2548 ntBASIC25.97■■□□□ 1.75
PTPN22Q9Y2R2 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC25.97■■□□□ 1.75
PTPN22Q9Y2R2 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
PTPN22Q9Y2R2 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
PTPN22Q9Y2R2 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
PTPN22Q9Y2R2 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
PTPN22Q9Y2R2 AC006015.1-201ENST00000429970 570 ntBASIC25.97■■□□□ 1.75
PTPN22Q9Y2R2 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
PTPN22Q9Y2R2 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC25.97■■□□□ 1.75
PTPN22Q9Y2R2 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC25.97■■□□□ 1.75
PTPN22Q9Y2R2 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
PTPN22Q9Y2R2 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PTPN22Q9Y2R2 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PTPN22Q9Y2R2 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC25.96■■□□□ 1.75
PTPN22Q9Y2R2 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PTPN22Q9Y2R2 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
PTPN22Q9Y2R2 AC073111.5-205ENST00000641717 521 ntBASIC25.96■■□□□ 1.75
PTPN22Q9Y2R2 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC25.96■■□□□ 1.75
PTPN22Q9Y2R2 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC25.96■■□□□ 1.75
PTPN22Q9Y2R2 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PTPN22Q9Y2R2 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC25.96■■□□□ 1.75
PTPN22Q9Y2R2 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
PTPN22Q9Y2R2 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
PTPN22Q9Y2R2 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC25.95■■□□□ 1.75
PTPN22Q9Y2R2 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
PTPN22Q9Y2R2 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.75
PTPN22Q9Y2R2 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
PTPN22Q9Y2R2 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC25.95■■□□□ 1.74
PTPN22Q9Y2R2 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC25.95■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 142.2 ms