Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC43.31■■■■■ 4.52
SHROOM4Q9ULL8 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC43.31■■■■■ 4.52
SHROOM4Q9ULL8 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC43.31■■■■■ 4.52
SHROOM4Q9ULL8 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC43.31■■■■■ 4.52
SHROOM4Q9ULL8 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC43.31■■■■■ 4.52
SHROOM4Q9ULL8 AC241377.3-202ENST00000626088 1088 ntBASIC43.31■■■■■ 4.52
SHROOM4Q9ULL8 AC241585.3-202ENST00000628937 1088 ntBASIC43.31■■■■■ 4.52
SHROOM4Q9ULL8 AC245100.8-202ENST00000629247 1058 ntBASIC43.31■■■■■ 4.52
SHROOM4Q9ULL8 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC43.31■■■■■ 4.52
SHROOM4Q9ULL8 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC43.3■■■■■ 4.52
SHROOM4Q9ULL8 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC43.3■■■■■ 4.52
SHROOM4Q9ULL8 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC43.3■■■■■ 4.52
SHROOM4Q9ULL8 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC43.29■■■■■ 4.52
SHROOM4Q9ULL8 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC43.29■■■■■ 4.52
SHROOM4Q9ULL8 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC43.29■■■■■ 4.52
SHROOM4Q9ULL8 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC43.29■■■■■ 4.52
SHROOM4Q9ULL8 HLA-L-211ENST00000482052 1765 ntBASIC43.28■■■■■ 4.52
SHROOM4Q9ULL8 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC43.28■■■■■ 4.52
SHROOM4Q9ULL8 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC43.28■■■■■ 4.52
SHROOM4Q9ULL8 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC43.28■■■■■ 4.52
SHROOM4Q9ULL8 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC43.28■■■■■ 4.52
SHROOM4Q9ULL8 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC43.28■■■■■ 4.52
SHROOM4Q9ULL8 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC43.27■■■■■ 4.52
SHROOM4Q9ULL8 GRAMD4P2-201ENST00000423297 1097 ntBASIC43.27■■■■■ 4.52
SHROOM4Q9ULL8 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC43.27■■■■■ 4.52
SHROOM4Q9ULL8 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC43.27■■■■■ 4.52
SHROOM4Q9ULL8 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC43.27■■■■■ 4.52
SHROOM4Q9ULL8 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC43.26■■■■■ 4.52
SHROOM4Q9ULL8 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC43.26■■■■■ 4.52
SHROOM4Q9ULL8 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC43.26■■■■■ 4.52
SHROOM4Q9ULL8 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC43.26■■■■■ 4.52
SHROOM4Q9ULL8 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC43.26■■■■■ 4.52
SHROOM4Q9ULL8 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC43.26■■■■■ 4.51
SHROOM4Q9ULL8 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC43.25■■■■■ 4.51
SHROOM4Q9ULL8 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC43.25■■■■■ 4.51
SHROOM4Q9ULL8 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC43.25■■■■■ 4.51
SHROOM4Q9ULL8 ABHD17AP1-201ENST00000358206 933 ntBASIC43.25■■■■■ 4.51
SHROOM4Q9ULL8 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC43.25■■■■■ 4.51
SHROOM4Q9ULL8 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC43.25■■■■■ 4.51
SHROOM4Q9ULL8 AL358852.1-201ENST00000623174 1268 ntBASIC43.25■■■■■ 4.51
SHROOM4Q9ULL8 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC43.25■■■■■ 4.51
SHROOM4Q9ULL8 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC43.24■■■■■ 4.51
SHROOM4Q9ULL8 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC43.24■■■■■ 4.51
SHROOM4Q9ULL8 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC43.24■■■■■ 4.51
SHROOM4Q9ULL8 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC43.24■■■■■ 4.51
SHROOM4Q9ULL8 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC43.24■■■■■ 4.51
SHROOM4Q9ULL8 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC43.24■■■■■ 4.51
SHROOM4Q9ULL8 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC43.24■■■■■ 4.51
SHROOM4Q9ULL8 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC43.24■■■■■ 4.51
SHROOM4Q9ULL8 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC43.24■■■■■ 4.51
SHROOM4Q9ULL8 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC43.23■■■■■ 4.51
SHROOM4Q9ULL8 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC43.22■■■■■ 4.51
SHROOM4Q9ULL8 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC43.22■■■■■ 4.51
SHROOM4Q9ULL8 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC43.22■■■■■ 4.51
SHROOM4Q9ULL8 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC43.22■■■■■ 4.51
SHROOM4Q9ULL8 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC43.21■■■■■ 4.51
SHROOM4Q9ULL8 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC43.21■■■■■ 4.51
SHROOM4Q9ULL8 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC43.21■■■■■ 4.51
SHROOM4Q9ULL8 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC43.21■■■■■ 4.51
SHROOM4Q9ULL8 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC43.21■■■■■ 4.51
SHROOM4Q9ULL8 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC43.21■■■■■ 4.51
SHROOM4Q9ULL8 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC43.21■■■■■ 4.51
SHROOM4Q9ULL8 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC43.21■■■■■ 4.51
SHROOM4Q9ULL8 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC43.2■■■■■ 4.51
SHROOM4Q9ULL8 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC43.2■■■■■ 4.51
SHROOM4Q9ULL8 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC43.2■■■■■ 4.51
SHROOM4Q9ULL8 STK32C-205ENST00000456004 607 ntTSL 2 BASIC43.2■■■■■ 4.51
SHROOM4Q9ULL8 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC43.2■■■■■ 4.51
SHROOM4Q9ULL8 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC43.2■■■■■ 4.51
SHROOM4Q9ULL8 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC43.19■■■■■ 4.51
SHROOM4Q9ULL8 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC43.19■■■■■ 4.51
SHROOM4Q9ULL8 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC43.19■■■■■ 4.5
SHROOM4Q9ULL8 AL022069.1-201ENST00000568025 1636 ntBASIC43.19■■■■■ 4.5
SHROOM4Q9ULL8 AC009102.2-201ENST00000606772 1639 ntBASIC43.19■■■■■ 4.5
SHROOM4Q9ULL8 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC43.19■■■■■ 4.5
SHROOM4Q9ULL8 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC43.19■■■■■ 4.5
SHROOM4Q9ULL8 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC43.19■■■■■ 4.5
SHROOM4Q9ULL8 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC43.18■■■■■ 4.5
SHROOM4Q9ULL8 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC43.18■■■■■ 4.5
SHROOM4Q9ULL8 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC43.18■■■■■ 4.5
SHROOM4Q9ULL8 AC135731.1-201ENST00000569415 2548 ntBASIC43.18■■■■■ 4.5
SHROOM4Q9ULL8 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC43.17■■■■■ 4.5
SHROOM4Q9ULL8 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC43.17■■■■■ 4.5
SHROOM4Q9ULL8 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC43.17■■■■■ 4.5
SHROOM4Q9ULL8 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC43.17■■■■■ 4.5
SHROOM4Q9ULL8 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC43.17■■■■■ 4.5
SHROOM4Q9ULL8 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC43.17■■■■■ 4.5
SHROOM4Q9ULL8 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC43.16■■■■■ 4.5
SHROOM4Q9ULL8 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC43.16■■■■■ 4.5
SHROOM4Q9ULL8 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC43.16■■■■■ 4.5
SHROOM4Q9ULL8 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC43.16■■■■■ 4.5
SHROOM4Q9ULL8 AC006455.2-201ENST00000429931 906 ntBASIC43.16■■■■■ 4.5
SHROOM4Q9ULL8 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC43.16■■■■■ 4.5
SHROOM4Q9ULL8 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC43.15■■■■■ 4.5
SHROOM4Q9ULL8 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC43.15■■■■■ 4.5
SHROOM4Q9ULL8 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC43.15■■■■■ 4.5
SHROOM4Q9ULL8 AC012414.1-201ENST00000556676 535 ntBASIC43.15■■■■■ 4.5
SHROOM4Q9ULL8 RAP2CP1-201ENST00000605103 478 ntBASIC43.15■■■■■ 4.5
SHROOM4Q9ULL8 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC43.15■■■■■ 4.5
SHROOM4Q9ULL8 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC43.14■■■■■ 4.5
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms