Protein–RNA interactions for Protein: Q9HD90

NEUROD4, Neurogenic differentiation factor 4, humanhuman

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEUROD4Q9HD90 AC137630.3-201ENST00000607245 391 ntBASIC21.27■■□□□ 1
NEUROD4Q9HD90 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.27■■□□□ 1
NEUROD4Q9HD90 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NEUROD4Q9HD90 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NEUROD4Q9HD90 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.27■□□□□ 0.99
NEUROD4Q9HD90 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.27■□□□□ 0.99
NEUROD4Q9HD90 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NEUROD4Q9HD90 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NEUROD4Q9HD90 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
NEUROD4Q9HD90 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NEUROD4Q9HD90 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.26■□□□□ 0.99
NEUROD4Q9HD90 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
NEUROD4Q9HD90 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NEUROD4Q9HD90 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.26■□□□□ 0.99
NEUROD4Q9HD90 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.26■□□□□ 0.99
NEUROD4Q9HD90 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.26■□□□□ 0.99
NEUROD4Q9HD90 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NEUROD4Q9HD90 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 SNX5-217ENST00000606557 1087 ntBASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
NEUROD4Q9HD90 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.24■□□□□ 0.99
NEUROD4Q9HD90 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.24■□□□□ 0.99
NEUROD4Q9HD90 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.24■□□□□ 0.99
NEUROD4Q9HD90 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NEUROD4Q9HD90 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
NEUROD4Q9HD90 AC019069.1-201ENST00000610008 1333 ntBASIC21.24■□□□□ 0.99
NEUROD4Q9HD90 C9orf163-202ENST00000624034 2573 ntBASIC21.24■□□□□ 0.99
NEUROD4Q9HD90 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
NEUROD4Q9HD90 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
NEUROD4Q9HD90 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.24■□□□□ 0.99
NEUROD4Q9HD90 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEUROD4Q9HD90 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEUROD4Q9HD90 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NEUROD4Q9HD90 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NEUROD4Q9HD90 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEUROD4Q9HD90 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.23■□□□□ 0.99
NEUROD4Q9HD90 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEUROD4Q9HD90 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.23■□□□□ 0.99
NEUROD4Q9HD90 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEUROD4Q9HD90 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NEUROD4Q9HD90 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
NEUROD4Q9HD90 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEUROD4Q9HD90 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
NEUROD4Q9HD90 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.21■□□□□ 0.99
NEUROD4Q9HD90 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
NEUROD4Q9HD90 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.21■□□□□ 0.99
NEUROD4Q9HD90 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NEUROD4Q9HD90 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.21■□□□□ 0.99
NEUROD4Q9HD90 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NEUROD4Q9HD90 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.21■□□□□ 0.99
NEUROD4Q9HD90 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.21■□□□□ 0.99
NEUROD4Q9HD90 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.21■□□□□ 0.99
NEUROD4Q9HD90 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 AC131212.1-201ENST00000613771 668 ntBASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NEUROD4Q9HD90 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NEUROD4Q9HD90 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
NEUROD4Q9HD90 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.19■□□□□ 0.98
NEUROD4Q9HD90 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.19■□□□□ 0.98
NEUROD4Q9HD90 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
NEUROD4Q9HD90 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NEUROD4Q9HD90 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
NEUROD4Q9HD90 AC009299.2-201ENST00000482477 511 ntBASIC21.19■□□□□ 0.98
NEUROD4Q9HD90 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms