Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC24.4■■□□□ 1.5
VPS52Q8N1B4 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.39■■□□□ 1.5
VPS52Q8N1B4 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
VPS52Q8N1B4 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC24.39■■□□□ 1.5
VPS52Q8N1B4 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.49
VPS52Q8N1B4 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
VPS52Q8N1B4 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
VPS52Q8N1B4 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.39■■□□□ 1.49
VPS52Q8N1B4 AC008764.7-201ENST00000593779 1081 ntBASIC24.39■■□□□ 1.49
VPS52Q8N1B4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
VPS52Q8N1B4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
VPS52Q8N1B4 AC138932.3-201ENST00000567634 1902 ntBASIC24.39■■□□□ 1.49
VPS52Q8N1B4 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
VPS52Q8N1B4 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
VPS52Q8N1B4 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
VPS52Q8N1B4 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
VPS52Q8N1B4 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.38■■□□□ 1.49
VPS52Q8N1B4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
VPS52Q8N1B4 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
VPS52Q8N1B4 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC24.38■■□□□ 1.49
VPS52Q8N1B4 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC24.38■■□□□ 1.49
VPS52Q8N1B4 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
VPS52Q8N1B4 C17orf82-201ENST00000623772 1530 ntBASIC24.38■■□□□ 1.49
VPS52Q8N1B4 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
VPS52Q8N1B4 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
VPS52Q8N1B4 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
VPS52Q8N1B4 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
VPS52Q8N1B4 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
VPS52Q8N1B4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
VPS52Q8N1B4 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC24.37■■□□□ 1.49
VPS52Q8N1B4 MIR6821-201ENST00000617625 74 ntBASIC24.37■■□□□ 1.49
VPS52Q8N1B4 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
VPS52Q8N1B4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
VPS52Q8N1B4 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
VPS52Q8N1B4 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
VPS52Q8N1B4 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
VPS52Q8N1B4 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC24.36■■□□□ 1.49
VPS52Q8N1B4 AC241377.3-202ENST00000626088 1088 ntBASIC24.36■■□□□ 1.49
VPS52Q8N1B4 AC241585.3-202ENST00000628937 1088 ntBASIC24.36■■□□□ 1.49
VPS52Q8N1B4 AC245100.8-202ENST00000629247 1058 ntBASIC24.36■■□□□ 1.49
VPS52Q8N1B4 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
VPS52Q8N1B4 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
VPS52Q8N1B4 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
VPS52Q8N1B4 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
VPS52Q8N1B4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
VPS52Q8N1B4 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
VPS52Q8N1B4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
VPS52Q8N1B4 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
VPS52Q8N1B4 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
VPS52Q8N1B4 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
VPS52Q8N1B4 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.35■■□□□ 1.49
VPS52Q8N1B4 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
VPS52Q8N1B4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
VPS52Q8N1B4 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.34■■□□□ 1.49
VPS52Q8N1B4 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
VPS52Q8N1B4 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
VPS52Q8N1B4 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
VPS52Q8N1B4 AC099791.1-201ENST00000416440 715 ntBASIC24.34■■□□□ 1.49
VPS52Q8N1B4 AC097381.1-201ENST00000429019 1296 ntBASIC24.34■■□□□ 1.49
VPS52Q8N1B4 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
VPS52Q8N1B4 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.34■■□□□ 1.49
VPS52Q8N1B4 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC24.34■■□□□ 1.49
VPS52Q8N1B4 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
VPS52Q8N1B4 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC24.34■■□□□ 1.49
VPS52Q8N1B4 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
VPS52Q8N1B4 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
VPS52Q8N1B4 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
VPS52Q8N1B4 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
VPS52Q8N1B4 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
VPS52Q8N1B4 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
VPS52Q8N1B4 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
VPS52Q8N1B4 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
VPS52Q8N1B4 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
VPS52Q8N1B4 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC24.33■■□□□ 1.49
VPS52Q8N1B4 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC24.33■■□□□ 1.49
VPS52Q8N1B4 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC24.32■■□□□ 1.48
VPS52Q8N1B4 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
VPS52Q8N1B4 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
VPS52Q8N1B4 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
VPS52Q8N1B4 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
VPS52Q8N1B4 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
VPS52Q8N1B4 AC006455.2-201ENST00000429931 906 ntBASIC24.32■■□□□ 1.48
VPS52Q8N1B4 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC24.32■■□□□ 1.48
VPS52Q8N1B4 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
VPS52Q8N1B4 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC24.32■■□□□ 1.48
VPS52Q8N1B4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC24.32■■□□□ 1.48
VPS52Q8N1B4 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
VPS52Q8N1B4 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
VPS52Q8N1B4 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
VPS52Q8N1B4 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
VPS52Q8N1B4 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC24.31■■□□□ 1.48
VPS52Q8N1B4 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC24.31■■□□□ 1.48
VPS52Q8N1B4 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
VPS52Q8N1B4 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
VPS52Q8N1B4 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
VPS52Q8N1B4 AC136469.2-201ENST00000623944 1028 ntBASIC24.31■■□□□ 1.48
VPS52Q8N1B4 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
VPS52Q8N1B4 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
VPS52Q8N1B4 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms