Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NPHP3Q7Z494 AC141586.4-201ENST00000624558 1573 ntBASIC31.14■■■□□ 2.58
NPHP3Q7Z494 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
NPHP3Q7Z494 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC31.14■■■□□ 2.58
NPHP3Q7Z494 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC31.14■■■□□ 2.58
NPHP3Q7Z494 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
NPHP3Q7Z494 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC31.13■■■□□ 2.57
NPHP3Q7Z494 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC31.13■■■□□ 2.57
NPHP3Q7Z494 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC31.13■■■□□ 2.57
NPHP3Q7Z494 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
NPHP3Q7Z494 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
NPHP3Q7Z494 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
NPHP3Q7Z494 TK2-208ENST00000545043 1120 ntTSL 2 BASIC31.13■■■□□ 2.57
NPHP3Q7Z494 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC31.13■■■□□ 2.57
NPHP3Q7Z494 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
NPHP3Q7Z494 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC31.12■■■□□ 2.57
NPHP3Q7Z494 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
NPHP3Q7Z494 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
NPHP3Q7Z494 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
NPHP3Q7Z494 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC31.12■■■□□ 2.57
NPHP3Q7Z494 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
NPHP3Q7Z494 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC31.12■■■□□ 2.57
NPHP3Q7Z494 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
NPHP3Q7Z494 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC31.12■■■□□ 2.57
NPHP3Q7Z494 USF2-207ENST00000595068 1612 ntTSL 5 BASIC31.11■■■□□ 2.57
NPHP3Q7Z494 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC31.11■■■□□ 2.57
NPHP3Q7Z494 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC31.11■■■□□ 2.57
NPHP3Q7Z494 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC31.11■■■□□ 2.57
NPHP3Q7Z494 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
NPHP3Q7Z494 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC31.11■■■□□ 2.57
NPHP3Q7Z494 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
NPHP3Q7Z494 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC31.1■■■□□ 2.57
NPHP3Q7Z494 SLC6A10P-202ENST00000431994 2058 ntBASIC31.1■■■□□ 2.57
NPHP3Q7Z494 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC31.1■■■□□ 2.57
NPHP3Q7Z494 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
NPHP3Q7Z494 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
NPHP3Q7Z494 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
NPHP3Q7Z494 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC31.09■■■□□ 2.57
NPHP3Q7Z494 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC31.09■■■□□ 2.57
NPHP3Q7Z494 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC31.09■■■□□ 2.57
NPHP3Q7Z494 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
NPHP3Q7Z494 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC31.08■■■□□ 2.57
NPHP3Q7Z494 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
NPHP3Q7Z494 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
NPHP3Q7Z494 CD37-213ENST00000598095 1598 ntTSL 2 BASIC31.08■■■□□ 2.57
NPHP3Q7Z494 RAP2CP1-201ENST00000605103 478 ntBASIC31.08■■■□□ 2.57
NPHP3Q7Z494 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
NPHP3Q7Z494 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
NPHP3Q7Z494 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC31.07■■■□□ 2.56
NPHP3Q7Z494 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
NPHP3Q7Z494 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
NPHP3Q7Z494 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
NPHP3Q7Z494 AC080038.1-201ENST00000611274 1154 ntBASIC31.07■■■□□ 2.56
NPHP3Q7Z494 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
NPHP3Q7Z494 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP3Q7Z494 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP3Q7Z494 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP3Q7Z494 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP3Q7Z494 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP3Q7Z494 AC006015.1-201ENST00000429970 570 ntBASIC31.06■■■□□ 2.56
NPHP3Q7Z494 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC31.06■■■□□ 2.56
NPHP3Q7Z494 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC31.06■■■□□ 2.56
NPHP3Q7Z494 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC31.06■■■□□ 2.56
NPHP3Q7Z494 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC31.06■■■□□ 2.56
NPHP3Q7Z494 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP3Q7Z494 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
NPHP3Q7Z494 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
NPHP3Q7Z494 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
NPHP3Q7Z494 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC31.05■■■□□ 2.56
NPHP3Q7Z494 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.56
NPHP3Q7Z494 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.56
NPHP3Q7Z494 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.56
NPHP3Q7Z494 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
NPHP3Q7Z494 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
NPHP3Q7Z494 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC31.04■■■□□ 2.56
NPHP3Q7Z494 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC31.04■■■□□ 2.56
NPHP3Q7Z494 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC31.04■■■□□ 2.56
NPHP3Q7Z494 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
NPHP3Q7Z494 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
NPHP3Q7Z494 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC31.04■■■□□ 2.56
NPHP3Q7Z494 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
NPHP3Q7Z494 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC31.03■■■□□ 2.56
NPHP3Q7Z494 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
NPHP3Q7Z494 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC31.03■■■□□ 2.56
NPHP3Q7Z494 AL161729.1-201ENST00000604104 1402 ntBASIC31.03■■■□□ 2.56
NPHP3Q7Z494 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
NPHP3Q7Z494 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC31.03■■■□□ 2.56
NPHP3Q7Z494 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
NPHP3Q7Z494 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
NPHP3Q7Z494 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
NPHP3Q7Z494 EMC9-206ENST00000560403 872 ntTSL 2 BASIC31.02■■■□□ 2.56
NPHP3Q7Z494 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC31.02■■■□□ 2.56
NPHP3Q7Z494 AC133637.1-201ENST00000624115 1537 ntBASIC31.02■■■□□ 2.56
NPHP3Q7Z494 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC31.02■■■□□ 2.56
NPHP3Q7Z494 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC31.02■■■□□ 2.56
NPHP3Q7Z494 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
NPHP3Q7Z494 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
NPHP3Q7Z494 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.56
NPHP3Q7Z494 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC31.01■■■□□ 2.56
NPHP3Q7Z494 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC31.01■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms