Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CKS2P33552 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CKS2P33552 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC16.59■□□□□ 0.25
CKS2P33552 PFN2-211ENST00000489155 636 ntTSL 4 BASIC16.59■□□□□ 0.25
CKS2P33552 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CKS2P33552 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC16.59■□□□□ 0.25
CKS2P33552 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
CKS2P33552 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CKS2P33552 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CKS2P33552 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CKS2P33552 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CKS2P33552 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC16.58■□□□□ 0.25
CKS2P33552 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.58■□□□□ 0.25
CKS2P33552 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CKS2P33552 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CKS2P33552 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CKS2P33552 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC16.58■□□□□ 0.24
CKS2P33552 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CKS2P33552 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC16.58■□□□□ 0.24
CKS2P33552 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CKS2P33552 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CKS2P33552 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CKS2P33552 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.57■□□□□ 0.24
CKS2P33552 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CKS2P33552 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CKS2P33552 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC16.57■□□□□ 0.24
CKS2P33552 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC16.57■□□□□ 0.24
CKS2P33552 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC16.57■□□□□ 0.24
CKS2P33552 HES6-205ENST00000409356 528 ntTSL 2 BASIC16.57■□□□□ 0.24
CKS2P33552 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CKS2P33552 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CKS2P33552 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CKS2P33552 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CKS2P33552 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CKS2P33552 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CKS2P33552 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC16.56■□□□□ 0.24
CKS2P33552 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CKS2P33552 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CKS2P33552 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CKS2P33552 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
CKS2P33552 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
CKS2P33552 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CKS2P33552 MIR3960-201ENST00000583311 91 ntBASIC16.56■□□□□ 0.24
CKS2P33552 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CKS2P33552 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CKS2P33552 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CKS2P33552 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC16.56■□□□□ 0.24
CKS2P33552 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CKS2P33552 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CKS2P33552 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CKS2P33552 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CKS2P33552 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC16.55■□□□□ 0.24
CKS2P33552 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CKS2P33552 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.54■□□□□ 0.24
CKS2P33552 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CKS2P33552 AC242852.2-201ENST00000615738 1807 ntBASIC16.54■□□□□ 0.24
CKS2P33552 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CKS2P33552 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CKS2P33552 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CKS2P33552 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CKS2P33552 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CKS2P33552 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CKS2P33552 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC16.54■□□□□ 0.24
CKS2P33552 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC16.54■□□□□ 0.24
CKS2P33552 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CKS2P33552 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CKS2P33552 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CKS2P33552 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CKS2P33552 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CKS2P33552 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CKS2P33552 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CKS2P33552 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CKS2P33552 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CKS2P33552 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CKS2P33552 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CKS2P33552 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CKS2P33552 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CKS2P33552 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CKS2P33552 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC16.53■□□□□ 0.24
CKS2P33552 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CKS2P33552 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CKS2P33552 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CKS2P33552 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC16.52■□□□□ 0.24
CKS2P33552 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC16.52■□□□□ 0.24
CKS2P33552 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CKS2P33552 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CKS2P33552 DUX4L11-201ENST00000611504 1267 ntBASIC16.52■□□□□ 0.24
CKS2P33552 DUX4L12-201ENST00000614593 1267 ntBASIC16.52■□□□□ 0.24
CKS2P33552 DUX4L14-201ENST00000621227 1267 ntBASIC16.52■□□□□ 0.24
CKS2P33552 HGH1-207ENST00000628266 258 ntTSL 5 BASIC16.52■□□□□ 0.24
CKS2P33552 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CKS2P33552 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CKS2P33552 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
CKS2P33552 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC16.51■□□□□ 0.23
CKS2P33552 AL137060.1-201ENST00000618151 2648 ntBASIC16.51■□□□□ 0.23
CKS2P33552 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CKS2P33552 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
CKS2P33552 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CKS2P33552 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CKS2P33552 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms