Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 VPREB3-202ENST00000398465 503 ntTSL 3 BASIC16.29■□□□□ 0.2
SCN4AP35499 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC16.29■□□□□ 0.2
SCN4AP35499 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC16.29■□□□□ 0.2
SCN4AP35499 TUBB8P9-201ENST00000422534 1276 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 TUBB8P10-201ENST00000430210 1279 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 AC105443.1-201ENST00000433754 712 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC16.29■□□□□ 0.2
SCN4AP35499 RN7SL22P-201ENST00000471800 269 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 AC022121.1-201ENST00000484584 579 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC16.29■□□□□ 0.2
SCN4AP35499 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC16.29■□□□□ 0.2
SCN4AP35499 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC16.29■□□□□ 0.2
SCN4AP35499 AC127002.1-201ENST00000619123 455 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 DUX4L33-201ENST00000635217 958 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SCN4AP35499 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
SCN4AP35499 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.29■□□□□ 0.2
SCN4AP35499 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SCN4AP35499 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.29■□□□□ 0.2
SCN4AP35499 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC16.29■□□□□ 0.2
SCN4AP35499 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SCN4AP35499 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SCN4AP35499 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.29■□□□□ 0.2
SCN4AP35499 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 AP001331.1-201ENST00000413008 1015 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 AC007881.1-201ENST00000437460 187 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC16.29■□□□□ 0.2
SCN4AP35499 RN7SL646P-201ENST00000492969 297 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC16.29■□□□□ 0.2
SCN4AP35499 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC16.29■□□□□ 0.2
SCN4AP35499 MIR4309-201ENST00000582498 83 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SCN4AP35499 AC245369.8-201ENST00000636589 306 ntBASIC16.29■□□□□ 0.2
SCN4AP35499 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
SCN4AP35499 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 TUBB4AP1-201ENST00000450755 1325 ntBASIC16.28■□□□□ 0.2
SCN4AP35499 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SCN4AP35499 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.28■□□□□ 0.2
SCN4AP35499 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SCN4AP35499 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.28■□□□□ 0.2
SCN4AP35499 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC16.28■□□□□ 0.2
SCN4AP35499 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.28■□□□□ 0.2
SCN4AP35499 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.28■□□□□ 0.2
SCN4AP35499 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 AGAP7P-201ENST00000582299 2062 ntBASIC16.28■□□□□ 0.2
SCN4AP35499 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 AGAP14-201ENST00000624701 2060 ntBASIC16.28■□□□□ 0.2
SCN4AP35499 FAM86FP-201ENST00000338711 969 ntBASIC16.28■□□□□ 0.2
SCN4AP35499 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC16.28■□□□□ 0.2
SCN4AP35499 MKL1-204ENST00000402630 747 ntTSL 2 BASIC16.28■□□□□ 0.2
SCN4AP35499 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC16.28■□□□□ 0.2
SCN4AP35499 AC139143.1-201ENST00000441772 1207 ntBASIC16.28■□□□□ 0.2
SCN4AP35499 AC007279.1-201ENST00000448547 837 ntBASIC16.28■□□□□ 0.2
SCN4AP35499 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 AL109954.1-202ENST00000564051 2148 ntBASIC16.28■□□□□ 0.2
SCN4AP35499 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
SCN4AP35499 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.28■□□□□ 0.2
SCN4AP35499 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 AC008894.3-201ENST00000624324 3103 ntBASIC16.28■□□□□ 0.2
SCN4AP35499 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.28■□□□□ 0.2
SCN4AP35499 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SCN4AP35499 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC16.27■□□□□ 0.2
SCN4AP35499 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SCN4AP35499 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SCN4AP35499 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms