Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 Z97653.2-201ENST00000623057 1418 ntBASIC14.27□□□□□ -0.13
COL6A3P12111 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.27□□□□□ -0.13
COL6A3P12111 TCAF2P1-201ENST00000291129 2421 ntBASIC14.27□□□□□ -0.13
COL6A3P12111 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A3P12111 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A3P12111 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
COL6A3P12111 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A3P12111 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.26□□□□□ -0.13
COL6A3P12111 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 TRAF4-202ENST00000262396 683 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 VTI1BP2-201ENST00000394154 696 ntBASIC14.26□□□□□ -0.13
COL6A3P12111 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.26□□□□□ -0.13
COL6A3P12111 GOSR1-205ENST00000467337 1011 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 SCOC-209ENST00000512749 841 ntAPPRIS ALT1 TSL 3 BASIC14.26□□□□□ -0.13
COL6A3P12111 OVOL1-AS1-203ENST00000534178 493 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC14.26□□□□□ -0.13
COL6A3P12111 LINC02486-201ENST00000604157 3000 ntBASIC14.26□□□□□ -0.13
COL6A3P12111 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
COL6A3P12111 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 AC136621.1-201ENST00000624017 2304 ntBASIC14.26□□□□□ -0.13
COL6A3P12111 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 AL354704.1-201ENST00000629369 1966 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 WFDC2-201ENST00000217425 356 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 OR4C6-201ENST00000314259 1020 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
COL6A3P12111 SNCG-202ENST00000372017 701 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 HNRNPA1P30-202ENST00000440699 997 ntBASIC14.26□□□□□ -0.13
COL6A3P12111 AL139412.1-201ENST00000441085 523 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 AC097658.2-201ENST00000512715 624 ntTSL 3 BASIC14.26□□□□□ -0.13
COL6A3P12111 SSSCA1-203ENST00000526877 713 ntTSL 3 BASIC14.26□□□□□ -0.13
COL6A3P12111 AC073592.1-201ENST00000543970 1282 ntTSL 3 BASIC14.26□□□□□ -0.13
COL6A3P12111 MT1G-204ENST00000569500 305 ntTSL 3 BASIC14.26□□□□□ -0.13
COL6A3P12111 AC002347.2-201ENST00000584139 171 ntTSL 3 BASIC14.26□□□□□ -0.13
COL6A3P12111 AC009041.1-202ENST00000599946 987 ntTSL 5 BASIC14.26□□□□□ -0.13
COL6A3P12111 Metazoa_SRP.85-201ENST00000610909 260 ntBASIC14.26□□□□□ -0.13
COL6A3P12111 MIR7847-201ENST00000610912 103 ntBASIC14.26□□□□□ -0.13
COL6A3P12111 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC14.26□□□□□ -0.13
COL6A3P12111 UBA3-212ENST00000630585 390 ntTSL 4 BASIC14.26□□□□□ -0.13
COL6A3P12111 ATXN10-212ENST00000640901 1185 ntTSL 5 BASIC14.26□□□□□ -0.13
COL6A3P12111 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 KRT8P25-201ENST00000473150 1456 ntBASIC14.26□□□□□ -0.13
COL6A3P12111 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
COL6A3P12111 IFT43-202ENST00000314067 833 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
COL6A3P12111 VAMP2-203ENST00000481878 557 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 SMUG1-213ENST00000506595 712 ntTSL 5 BASIC14.26□□□□□ -0.13
COL6A3P12111 AC002351.1-201ENST00000546852 590 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 AP003096.1-201ENST00000565199 503 ntTSL 3 BASIC14.26□□□□□ -0.13
COL6A3P12111 MXRA7-204ENST00000585519 540 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
COL6A3P12111 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A3P12111 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A3P12111 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
COL6A3P12111 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 OLFML1-204ENST00000530135 1620 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
COL6A3P12111 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.25□□□□□ -0.13
COL6A3P12111 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 IQCF1-201ENST00000310914 695 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 KRTAP4-6-201ENST00000345847 1055 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
COL6A3P12111 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC14.25□□□□□ -0.13
COL6A3P12111 TRBV22-1-201ENST00000424543 337 ntBASIC14.25□□□□□ -0.13
COL6A3P12111 TSACC-206ENST00000466306 477 ntTSL 3 BASIC14.25□□□□□ -0.13
COL6A3P12111 AC114812.4-201ENST00000506676 757 ntBASIC14.25□□□□□ -0.13
COL6A3P12111 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.25□□□□□ -0.13
COL6A3P12111 RN7SL238P-201ENST00000613832 290 ntBASIC14.25□□□□□ -0.13
COL6A3P12111 Metazoa_SRP.139-201ENST00000616096 290 ntBASIC14.25□□□□□ -0.13
COL6A3P12111 RN7SL106P-201ENST00000618104 290 ntBASIC14.25□□□□□ -0.13
COL6A3P12111 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
COL6A3P12111 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.25□□□□□ -0.13
COL6A3P12111 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
COL6A3P12111 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 GUCY1A3-213ENST00000621234 1788 ntTSL 5 BASIC14.25□□□□□ -0.13
COL6A3P12111 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 BX088651.4-202ENST00000428895 1479 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 AL590399.1-202ENST00000429818 1480 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 AL512625.1-202ENST00000476224 1480 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC14.25□□□□□ -0.13
COL6A3P12111 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 AP000346.1-201ENST00000390329 1087 ntTSL 5 BASIC14.25□□□□□ -0.13
COL6A3P12111 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC14.25□□□□□ -0.13
COL6A3P12111 TMEM255B-205ENST00000488362 694 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
COL6A3P12111 AC233724.7-201ENST00000511476 253 ntBASIC14.25□□□□□ -0.13
COL6A3P12111 LINC02074-201ENST00000581028 569 ntTSL 4 BASIC14.25□□□□□ -0.13
COL6A3P12111 LINC02074-202ENST00000584003 573 ntTSL 4 BASIC14.25□□□□□ -0.13
COL6A3P12111 AC104423.1-201ENST00000591742 728 ntTSL 3 BASIC14.25□□□□□ -0.13
COL6A3P12111 DUSP22-206ENST00000603453 804 ntTSL 4 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms