Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC010202.1-201ENST00000551181 405 ntBASIC13.73□□□□□ -0.21
VPS13AQ96RL7 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC13.73□□□□□ -0.21
VPS13AQ96RL7 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS13AQ96RL7 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 MKL1-204ENST00000402630 747 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 DNM1P48-201ENST00000419538 439 ntBASIC13.72□□□□□ -0.21
VPS13AQ96RL7 AL161932.2-201ENST00000435436 679 ntBASIC13.72□□□□□ -0.21
VPS13AQ96RL7 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 RNA5SP288-201ENST00000516075 93 ntBASIC13.72□□□□□ -0.21
VPS13AQ96RL7 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.72□□□□□ -0.21
VPS13AQ96RL7 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 AC132825.4-202ENST00000578792 434 ntBASIC13.72□□□□□ -0.21
VPS13AQ96RL7 MIR4459-201ENST00000581837 66 ntBASIC13.72□□□□□ -0.21
VPS13AQ96RL7 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 HNRNPA1P73-201ENST00000446472 928 ntBASIC13.72□□□□□ -0.21
VPS13AQ96RL7 AC116914.2-201ENST00000571741 291 ntTSL 5 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 AC126365.1-201ENST00000578585 1514 ntBASIC13.72□□□□□ -0.21
VPS13AQ96RL7 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13AQ96RL7 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 HNRNPA1P59-201ENST00000430583 918 ntBASIC13.71□□□□□ -0.21
VPS13AQ96RL7 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 AC148476.1-201ENST00000622182 705 ntBASIC13.71□□□□□ -0.21
VPS13AQ96RL7 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 KIR2DL4-203ENST00000357494 1396 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 AACSP1-202ENST00000521412 1095 ntBASIC13.71□□□□□ -0.21
VPS13AQ96RL7 NEMF-210ENST00000556672 590 ntTSL 2 BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.71□□□□□ -0.21
VPS13AQ96RL7 AC015813.5-201ENST00000624641 1514 ntBASIC13.71□□□□□ -0.21
VPS13AQ96RL7 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 TUBB2BP1-201ENST00000404155 871 ntBASIC13.71□□□□□ -0.22
VPS13AQ96RL7 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 AC000078.1-201ENST00000420617 682 ntBASIC13.71□□□□□ -0.22
VPS13AQ96RL7 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 AL136298.3-201ENST00000556746 445 ntBASIC13.71□□□□□ -0.22
VPS13AQ96RL7 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 PSME3-213ENST00000592169 826 ntTSL 3 BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 AL591471.1-201ENST00000621855 229 ntBASIC13.71□□□□□ -0.22
VPS13AQ96RL7 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 FAM157C-201ENST00000563357 1806 ntTSL 2 BASIC13.71□□□□□ -0.22
VPS13AQ96RL7 AMT-256ENST00000638063 1783 ntTSL 5 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 AC064850.1-201ENST00000413279 1398 ntBASIC13.7□□□□□ -0.22
VPS13AQ96RL7 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 CICP16-201ENST00000502609 2813 ntBASIC13.7□□□□□ -0.22
VPS13AQ96RL7 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 AC092865.2-201ENST00000439409 971 ntBASIC13.7□□□□□ -0.22
VPS13AQ96RL7 AC104117.4-201ENST00000521486 847 ntBASIC13.7□□□□□ -0.22
VPS13AQ96RL7 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms