Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL022334.2-201ENST00000610000 484 ntBASIC13.31□□□□□ -0.28
RNF4P78317 AC091812.3-201ENST00000621362 345 ntBASIC13.31□□□□□ -0.28
RNF4P78317 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RNF4P78317 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.31□□□□□ -0.28
RNF4P78317 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RNF4P78317 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
RNF4P78317 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC13.31□□□□□ -0.28
RNF4P78317 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.31□□□□□ -0.28
RNF4P78317 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.31□□□□□ -0.28
RNF4P78317 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC13.3□□□□□ -0.28
RNF4P78317 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 AC015909.3-201ENST00000572855 1794 ntBASIC13.3□□□□□ -0.28
RNF4P78317 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
RNF4P78317 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC13.3□□□□□ -0.28
RNF4P78317 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.3□□□□□ -0.28
RNF4P78317 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.3□□□□□ -0.28
RNF4P78317 PDIA3P2-201ENST00000428073 158 ntBASIC13.3□□□□□ -0.28
RNF4P78317 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
RNF4P78317 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC13.3□□□□□ -0.28
RNF4P78317 AC073150.1-201ENST00000450406 1084 ntBASIC13.3□□□□□ -0.28
RNF4P78317 RN7SL277P-201ENST00000481521 288 ntBASIC13.3□□□□□ -0.28
RNF4P78317 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC13.3□□□□□ -0.28
RNF4P78317 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC13.3□□□□□ -0.28
RNF4P78317 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 NAT9-211ENST00000580632 799 ntTSL 3 BASIC13.3□□□□□ -0.28
RNF4P78317 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC13.3□□□□□ -0.28
RNF4P78317 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC13.3□□□□□ -0.28
RNF4P78317 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 AL021578.1-201ENST00000613646 709 ntBASIC13.3□□□□□ -0.28
RNF4P78317 MIR6769A-201ENST00000617340 73 ntBASIC13.3□□□□□ -0.28
RNF4P78317 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.3□□□□□ -0.28
RNF4P78317 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.3□□□□□ -0.28
RNF4P78317 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
RNF4P78317 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.3□□□□□ -0.28
RNF4P78317 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RNF4P78317 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.3□□□□□ -0.28
RNF4P78317 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.29□□□□□ -0.28
RNF4P78317 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.29□□□□□ -0.28
RNF4P78317 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 AC023908.3-201ENST00000564211 3047 ntBASIC13.29□□□□□ -0.28
RNF4P78317 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 189.6 ms