Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 RN7SKP212-201ENST00000410851 328 ntBASIC16.6■□□□□ 0.25
COL4A5P29400 NDUFB2P1-201ENST00000506966 295 ntBASIC16.6■□□□□ 0.25
COL4A5P29400 AC023824.1-201ENST00000562945 2975 ntBASIC16.6■□□□□ 0.25
COL4A5P29400 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC16.6■□□□□ 0.25
COL4A5P29400 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A5P29400 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC16.6■□□□□ 0.25
COL4A5P29400 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC16.6■□□□□ 0.25
COL4A5P29400 AL139424.3-202ENST00000641619 917 ntBASIC16.6■□□□□ 0.25
COL4A5P29400 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 AL121753.2-201ENST00000624581 1461 ntBASIC16.6■□□□□ 0.25
COL4A5P29400 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC16.6■□□□□ 0.25
COL4A5P29400 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.6■□□□□ 0.25
COL4A5P29400 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL4A5P29400 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A5P29400 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.6■□□□□ 0.25
COL4A5P29400 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL4A5P29400 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A5P29400 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A5P29400 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC16.59■□□□□ 0.25
COL4A5P29400 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC16.59■□□□□ 0.25
COL4A5P29400 AC026412.1-206ENST00000502273 206 ntBASIC16.59■□□□□ 0.25
COL4A5P29400 OR52V1P-201ENST00000515557 898 ntBASIC16.59■□□□□ 0.25
COL4A5P29400 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC16.59■□□□□ 0.25
COL4A5P29400 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL4A5P29400 CLPP-205ENST00000596605 646 ntTSL 2 BASIC16.59■□□□□ 0.25
COL4A5P29400 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC16.59■□□□□ 0.25
COL4A5P29400 SNX20-205ENST00000610485 557 ntTSL 5 BASIC16.59■□□□□ 0.25
COL4A5P29400 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC16.59■□□□□ 0.25
COL4A5P29400 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 AL008638.4-201ENST00000624792 1315 ntBASIC16.59■□□□□ 0.25
COL4A5P29400 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.59■□□□□ 0.25
COL4A5P29400 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
COL4A5P29400 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
COL4A5P29400 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC16.59■□□□□ 0.25
COL4A5P29400 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
COL4A5P29400 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 AC024075.2-201ENST00000598112 1473 ntBASIC16.59■□□□□ 0.25
COL4A5P29400 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
COL4A5P29400 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A5P29400 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
COL4A5P29400 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
COL4A5P29400 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC16.59■□□□□ 0.25
COL4A5P29400 AC023051.2-201ENST00000541141 460 ntBASIC16.59■□□□□ 0.25
COL4A5P29400 METTL7AP1-201ENST00000547343 496 ntBASIC16.59■□□□□ 0.25
COL4A5P29400 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC16.59■□□□□ 0.25
COL4A5P29400 BX322562.1-201ENST00000617004 561 ntBASIC16.59■□□□□ 0.25
COL4A5P29400 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC16.59■□□□□ 0.25
COL4A5P29400 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC16.59■□□□□ 0.25
COL4A5P29400 AL590556.2-202ENST00000636906 844 ntBASIC16.59■□□□□ 0.25
COL4A5P29400 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
COL4A5P29400 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL4A5P29400 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL4A5P29400 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.58■□□□□ 0.25
COL4A5P29400 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL4A5P29400 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.58■□□□□ 0.25
COL4A5P29400 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC16.58■□□□□ 0.25
COL4A5P29400 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL4A5P29400 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC16.58■□□□□ 0.25
COL4A5P29400 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL4A5P29400 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC16.58■□□□□ 0.25
COL4A5P29400 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL4A5P29400 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
COL4A5P29400 RCC2P1-201ENST00000452257 1476 ntBASIC16.58■□□□□ 0.24
COL4A5P29400 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.58■□□□□ 0.24
COL4A5P29400 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
COL4A5P29400 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.58■□□□□ 0.24
COL4A5P29400 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms