Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGB1P09429 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGB1P09429 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
HMGB1P09429 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGB1P09429 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HMGB1P09429 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGB1P09429 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
HMGB1P09429 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC16.92■□□□□ 0.3
HMGB1P09429 RPS2P32-201ENST00000439199 892 ntBASIC16.92■□□□□ 0.3
HMGB1P09429 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HMGB1P09429 AC005740.2-201ENST00000511085 419 ntBASIC16.92■□□□□ 0.3
HMGB1P09429 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.92■□□□□ 0.3
HMGB1P09429 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGB1P09429 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.92■□□□□ 0.3
HMGB1P09429 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC16.92■□□□□ 0.3
HMGB1P09429 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.92■□□□□ 0.3
HMGB1P09429 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGB1P09429 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGB1P09429 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
HMGB1P09429 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGB1P09429 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGB1P09429 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HMGB1P09429 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HMGB1P09429 AC130686.1-201ENST00000622936 2466 ntBASIC16.92■□□□□ 0.3
HMGB1P09429 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 RPL13AP3-202ENST00000494676 1473 ntBASIC16.92■□□□□ 0.3
HMGB1P09429 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGB1P09429 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB1P09429 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGB1P09429 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.91■□□□□ 0.3
HMGB1P09429 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
HMGB1P09429 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB1P09429 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB1P09429 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC16.91■□□□□ 0.3
HMGB1P09429 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC16.91■□□□□ 0.3
HMGB1P09429 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB1P09429 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB1P09429 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGB1P09429 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
HMGB1P09429 AC013355.1-201ENST00000562625 723 ntBASIC16.91■□□□□ 0.3
HMGB1P09429 SKA2-205ENST00000580541 689 ntTSL 3 BASIC16.91■□□□□ 0.3
HMGB1P09429 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.91■□□□□ 0.3
HMGB1P09429 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGB1P09429 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
HMGB1P09429 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 GOLGA8IP-202ENST00000611635 2100 ntBASIC16.91■□□□□ 0.3
HMGB1P09429 RAN-210ENST00000541630 1475 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB1P09429 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HMGB1P09429 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB1P09429 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB1P09429 AC018735.1-201ENST00000437208 1502 ntBASIC16.91■□□□□ 0.3
HMGB1P09429 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
HMGB1P09429 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGB1P09429 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB1P09429 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB1P09429 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
HMGB1P09429 AL928654.5-201ENST00000624831 2501 ntBASIC16.9■□□□□ 0.3
HMGB1P09429 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB1P09429 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.9■□□□□ 0.3
HMGB1P09429 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms