Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 FBF1-210ENST00000592193 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 FAM237B-201ENST00000637645 3877 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
CXCL1P09341 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 SLC13A2-201ENST00000314669 2711 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 RFX5-202ENST00000368870 2459 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
CXCL1P09341 MDH2-204ENST00000443006 2020 ntTSL 2 BASIC11.16□□□□□ -0.62
CXCL1P09341 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 RGPD5-203ENST00000393283 3304 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 LPP-AS2-201ENST00000605573 2852 ntBASIC11.16□□□□□ -0.62
CXCL1P09341 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC11.16□□□□□ -0.62
CXCL1P09341 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC11.16□□□□□ -0.62
CXCL1P09341 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 LHX6-204ENST00000394319 3465 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 UBR7-201ENST00000013070 3694 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC11.16□□□□□ -0.62
CXCL1P09341 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC11.16□□□□□ -0.62
CXCL1P09341 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 AL162391.1-201ENST00000419853 2102 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 KRT18P32-201ENST00000424695 1287 ntBASIC11.16□□□□□ -0.62
CXCL1P09341 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC11.16□□□□□ -0.62
CXCL1P09341 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC11.16□□□□□ -0.62
CXCL1P09341 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 KRT18P8-201ENST00000581937 1246 ntBASIC11.16□□□□□ -0.62
CXCL1P09341 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
CXCL1P09341 AC009955.4-201ENST00000597192 544 ntBASIC11.16□□□□□ -0.62
CXCL1P09341 AC003101.2-201ENST00000612557 442 ntBASIC11.16□□□□□ -0.62
CXCL1P09341 LINC00628-201ENST00000628516 1289 ntBASIC11.16□□□□□ -0.62
CXCL1P09341 AL033527.5-202ENST00000641632 1098 ntBASIC11.16□□□□□ -0.62
CXCL1P09341 ZSCAN32-202ENST00000396846 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 ZSCAN32-203ENST00000396852 3169 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 FAM156B-201ENST00000416841 2537 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC11.16□□□□□ -0.62
CXCL1P09341 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
CXCL1P09341 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
CXCL1P09341 EPS15L1-201ENST00000248070 2924 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 KRT42P-201ENST00000398469 2864 ntTSL 2 BASIC11.16□□□□□ -0.62
CXCL1P09341 ALOXE3-201ENST00000318227 3053 ntTSL 2 BASIC11.16□□□□□ -0.62
CXCL1P09341 DDX11-223ENST00000542838 3079 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 ACSF3-201ENST00000317447 3664 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
CXCL1P09341 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 ST3GAL5-204ENST00000393808 2236 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 RGS16-201ENST00000367558 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 SCP2-203ENST00000371514 2811 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 TMPRSS13-201ENST00000430170 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC11.16□□□□□ -0.62
CXCL1P09341 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 GRIK5-202ENST00000301218 3310 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
CXCL1P09341 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC11.15□□□□□ -0.62
CXCL1P09341 AL031687.1-201ENST00000450586 2137 ntTSL 2 BASIC11.15□□□□□ -0.62
CXCL1P09341 PNPLA8-206ENST00000436062 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
CXCL1P09341 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 STK11IP-204ENST00000456909 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC11.15□□□□□ -0.62
CXCL1P09341 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 GRM7-201ENST00000357716 4127 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 ARNTL-202ENST00000401424 2788 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC11.15□□□□□ -0.62
CXCL1P09341 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 AC087164.2-201ENST00000624514 3130 ntBASIC11.15□□□□□ -0.62
CXCL1P09341 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
CXCL1P09341 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
CXCL1P09341 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
CXCL1P09341 AL645937.2-201ENST00000396808 931 ntBASIC11.15□□□□□ -0.62
CXCL1P09341 AC005237.2-201ENST00000434368 219 ntBASIC11.15□□□□□ -0.62
CXCL1P09341 KRT18P64-201ENST00000434946 1219 ntBASIC11.15□□□□□ -0.62
CXCL1P09341 MTND6P24-201ENST00000440466 518 ntBASIC11.15□□□□□ -0.62
CXCL1P09341 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC11.15□□□□□ -0.62
CXCL1P09341 AC009078.2-202ENST00000463353 338 ntBASIC11.15□□□□□ -0.62
CXCL1P09341 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC11.15□□□□□ -0.62
CXCL1P09341 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC11.15□□□□□ -0.62
CXCL1P09341 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC11.15□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms