Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CR1P49238 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC12.71□□□□□ -0.37
CX3CR1P49238 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC12.71□□□□□ -0.37
CX3CR1P49238 SKA2-202ENST00000437036 625 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CR1P49238 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CR1P49238 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CR1P49238 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC12.71□□□□□ -0.37
CX3CR1P49238 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CR1P49238 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC12.71□□□□□ -0.37
CX3CR1P49238 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC12.71□□□□□ -0.37
CX3CR1P49238 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC12.71□□□□□ -0.37
CX3CR1P49238 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CR1P49238 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC12.71□□□□□ -0.37
CX3CR1P49238 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.38
CX3CR1P49238 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CX3CR1P49238 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CX3CR1P49238 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
CX3CR1P49238 HADH-202ENST00000403312 1752 ntTSL 5 BASIC12.71□□□□□ -0.38
CX3CR1P49238 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
CX3CR1P49238 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC12.71□□□□□ -0.38
CX3CR1P49238 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CX3CR1P49238 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CX3CR1P49238 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC12.71□□□□□ -0.38
CX3CR1P49238 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC12.71□□□□□ -0.38
CX3CR1P49238 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CR1P49238 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 AL591122.2-201ENST00000624125 1853 ntBASIC12.7□□□□□ -0.38
CX3CR1P49238 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CR1P49238 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CR1P49238 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CX3CR1P49238 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 MIR326-201ENST00000362220 95 ntBASIC12.7□□□□□ -0.38
CX3CR1P49238 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
CX3CR1P49238 EDF1-203ENST00000371649 790 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CR1P49238 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 AC010141.1-201ENST00000411585 623 ntBASIC12.7□□□□□ -0.38
CX3CR1P49238 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC12.7□□□□□ -0.38
CX3CR1P49238 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC12.7□□□□□ -0.38
CX3CR1P49238 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC12.7□□□□□ -0.38
CX3CR1P49238 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC12.7□□□□□ -0.38
CX3CR1P49238 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 RHOXF1P1-202ENST00000635473 501 ntBASIC12.7□□□□□ -0.38
CX3CR1P49238 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 AL157996.1-201ENST00000624684 2299 ntBASIC12.7□□□□□ -0.38
CX3CR1P49238 COL6A4P2-202ENST00000504443 2753 ntBASIC12.7□□□□□ -0.38
CX3CR1P49238 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CR1P49238 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 SHC1P1-201ENST00000425230 1745 ntBASIC12.7□□□□□ -0.38
CX3CR1P49238 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CR1P49238 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC12.7□□□□□ -0.38
CX3CR1P49238 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CR1P49238 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CR1P49238 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CR1P49238 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CR1P49238 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CR1P49238 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC12.69□□□□□ -0.38
CX3CR1P49238 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC12.69□□□□□ -0.38
CX3CR1P49238 STRCP1-201ENST00000509801 5328 ntBASIC12.69□□□□□ -0.38
CX3CR1P49238 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CR1P49238 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CR1P49238 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms