Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
RFC3P40938 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
RFC3P40938 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.24□□□□□ -0.29
RFC3P40938 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC13.24□□□□□ -0.29
RFC3P40938 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
RFC3P40938 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 KRT18P36-201ENST00000411618 1276 ntBASIC13.24□□□□□ -0.29
RFC3P40938 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC13.24□□□□□ -0.29
RFC3P40938 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC13.24□□□□□ -0.29
RFC3P40938 RPL8P2-201ENST00000430538 502 ntBASIC13.24□□□□□ -0.29
RFC3P40938 AL353637.1-201ENST00000451571 732 ntBASIC13.24□□□□□ -0.29
RFC3P40938 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.24□□□□□ -0.29
RFC3P40938 CEP164P1-201ENST00000455142 418 ntBASIC13.24□□□□□ -0.29
RFC3P40938 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC13.24□□□□□ -0.29
RFC3P40938 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC13.24□□□□□ -0.29
RFC3P40938 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 PRKXP1-201ENST00000561423 1122 ntBASIC13.24□□□□□ -0.29
RFC3P40938 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC13.24□□□□□ -0.29
RFC3P40938 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC13.24□□□□□ -0.29
RFC3P40938 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
RFC3P40938 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
RFC3P40938 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.24□□□□□ -0.29
RFC3P40938 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.24□□□□□ -0.29
RFC3P40938 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.24□□□□□ -0.29
RFC3P40938 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 CAP2P1-201ENST00000557743 1390 ntBASIC13.23□□□□□ -0.29
RFC3P40938 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 FRMPD2B-201ENST00000431305 1347 ntBASIC13.23□□□□□ -0.29
RFC3P40938 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 OR2K2-202ENST00000374428 1038 ntBASIC13.23□□□□□ -0.29
RFC3P40938 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 UFM1-202ENST00000379649 846 ntTSL 4 BASIC13.23□□□□□ -0.29
RFC3P40938 ELK2AP-201ENST00000392510 1007 ntBASIC13.23□□□□□ -0.29
RFC3P40938 PARVG-202ENST00000415224 999 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC13.23□□□□□ -0.29
RFC3P40938 PARP8-218ENST00000513738 596 ntTSL 4 BASIC13.23□□□□□ -0.29
RFC3P40938 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.23□□□□□ -0.29
RFC3P40938 POU5F1P2-201ENST00000521750 823 ntBASIC13.23□□□□□ -0.29
RFC3P40938 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 AC242376.1-201ENST00000559033 726 ntBASIC13.23□□□□□ -0.29
RFC3P40938 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 COG4-212ENST00000564653 590 ntTSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 RN7SL190P-201ENST00000582519 257 ntBASIC13.23□□□□□ -0.29
RFC3P40938 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 MEG3_2.1-201ENST00000611456 105 ntBASIC13.23□□□□□ -0.29
RFC3P40938 AL353726.2-201ENST00000623259 884 ntBASIC13.23□□□□□ -0.29
RFC3P40938 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 LINC01165-201ENST00000445190 1623 ntBASIC13.23□□□□□ -0.29
RFC3P40938 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms