Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
SOX3P41225 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX3P41225 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX3P41225 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
SOX3P41225 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 AL136172.1-201ENST00000598590 1394 ntBASIC13.63□□□□□ -0.23
SOX3P41225 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.63□□□□□ -0.23
SOX3P41225 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX3P41225 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 GPAA1P2-201ENST00000417923 928 ntBASIC13.63□□□□□ -0.23
SOX3P41225 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.63□□□□□ -0.23
SOX3P41225 PUDPP3-201ENST00000445368 636 ntBASIC13.63□□□□□ -0.23
SOX3P41225 AC004898.1-201ENST00000451057 766 ntBASIC13.63□□□□□ -0.23
SOX3P41225 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC13.63□□□□□ -0.23
SOX3P41225 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.63□□□□□ -0.23
SOX3P41225 AC100827.2-201ENST00000563214 1194 ntBASIC13.63□□□□□ -0.23
SOX3P41225 DUX4L46-201ENST00000566845 751 ntBASIC13.63□□□□□ -0.23
SOX3P41225 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC13.63□□□□□ -0.23
SOX3P41225 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.63□□□□□ -0.23
SOX3P41225 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX3P41225 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
SOX3P41225 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX3P41225 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.63□□□□□ -0.23
SOX3P41225 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
SOX3P41225 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
SOX3P41225 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX3P41225 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.62□□□□□ -0.23
SOX3P41225 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.62□□□□□ -0.23
SOX3P41225 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 KRT8P29-201ENST00000420409 1371 ntBASIC13.62□□□□□ -0.23
SOX3P41225 AC016397.2-201ENST00000624848 1985 ntBASIC13.62□□□□□ -0.23
SOX3P41225 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 RNMTL1P1-201ENST00000454103 560 ntBASIC13.62□□□□□ -0.23
SOX3P41225 AC022494.1-201ENST00000466044 728 ntBASIC13.62□□□□□ -0.23
SOX3P41225 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 AC126915.1-201ENST00000522847 1038 ntBASIC13.62□□□□□ -0.23
SOX3P41225 NOP2-211ENST00000540228 668 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.62□□□□□ -0.23
SOX3P41225 MIR3615-201ENST00000581999 87 ntBASIC13.62□□□□□ -0.23
SOX3P41225 NKG7-204ENST00000595217 816 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 AC132192.2-201ENST00000596206 1147 ntBASIC13.62□□□□□ -0.23
SOX3P41225 AC008825.2-201ENST00000603374 718 ntBASIC13.62□□□□□ -0.23
SOX3P41225 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.62□□□□□ -0.23
SOX3P41225 AL162426.1-201ENST00000624141 743 ntBASIC13.62□□□□□ -0.23
SOX3P41225 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.62□□□□□ -0.23
SOX3P41225 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
SOX3P41225 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SOX3P41225 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
SOX3P41225 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms