Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
SDCBPO00560 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 STK3-218ENST00000617590 2485 ntTSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 AC134312.5-201ENST00000568031 1313 ntBASIC12.34□□□□□ -0.43
SDCBPO00560 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC12.34□□□□□ -0.43
SDCBPO00560 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
SDCBPO00560 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
SDCBPO00560 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
SDCBPO00560 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC12.33□□□□□ -0.43
SDCBPO00560 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
SDCBPO00560 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
SDCBPO00560 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
SDCBPO00560 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
SDCBPO00560 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC12.33□□□□□ -0.44
SDCBPO00560 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
SDCBPO00560 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
SDCBPO00560 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
SDCBPO00560 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
SDCBPO00560 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
SDCBPO00560 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC12.33□□□□□ -0.44
SDCBPO00560 AC027307.3-201ENST00000594262 1100 ntBASIC12.33□□□□□ -0.44
SDCBPO00560 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC12.33□□□□□ -0.44
SDCBPO00560 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
SDCBPO00560 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
SDCBPO00560 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 AL591122.2-201ENST00000624125 1853 ntBASIC12.33□□□□□ -0.44
SDCBPO00560 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
SDCBPO00560 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC12.33□□□□□ -0.44
SDCBPO00560 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
SDCBPO00560 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC12.33□□□□□ -0.44
SDCBPO00560 AC083964.2-201ENST00000623988 2396 ntBASIC12.33□□□□□ -0.44
SDCBPO00560 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC12.33□□□□□ -0.44
SDCBPO00560 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
SDCBPO00560 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
SDCBPO00560 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
SDCBPO00560 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC12.32□□□□□ -0.44
SDCBPO00560 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
SDCBPO00560 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
SDCBPO00560 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC12.32□□□□□ -0.44
SDCBPO00560 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
SDCBPO00560 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC12.32□□□□□ -0.44
SDCBPO00560 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC12.32□□□□□ -0.44
SDCBPO00560 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC12.32□□□□□ -0.44
SDCBPO00560 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
SDCBPO00560 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
SDCBPO00560 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
SDCBPO00560 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SDCBPO00560 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
SDCBPO00560 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC12.32□□□□□ -0.44
SDCBPO00560 BAATP1-201ENST00000412284 1225 ntBASIC12.32□□□□□ -0.44
SDCBPO00560 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC12.32□□□□□ -0.44
SDCBPO00560 AC012441.1-201ENST00000446669 685 ntBASIC12.32□□□□□ -0.44
SDCBPO00560 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms